Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01362 ATGGATTTGGATAGTATCGAGTGTGTCTCGTCGTCCGATGGTTTCGGTGAGGATGACATCCATTTGCACCACACTCTTCATCCTTATTCTCACTCTCATCATCACCCCGAGTTGTCAGCATCGAAGCCTCGTAATGGTAACAACAACAGCGCTGTGAACGCCCCCACTGCCATTGCCATTGCGCCGTCGACTAGCGTCCATGAATTGCTCGAATGCCCTGTCTGCACTAATTCTATGTACCCTCCCATCCATCAGTGCCACAATGGACATACCTTATGTTCTACTTGTAAAACACGGGTTCATAATCGCTGCCCTACTTGTAGACAAGAGCTTGGAGATATTAGGTGCTTAGCACTGGAGAAGGTGGCAGAGTCGCTTGAATTGCCTTGCAAGTATTTTTCCCTCGGATGCCCTGAGATATTTCCGTACTATGGTAAGCTTAAGCATGAGGCTTTATGCAACTTCAGACCCTATAGTTGCCCGTATGCTGGCTCGGAATGCTCTGCTGTTGGGGATATTTCCTTTCTTGTCGCCCATCTGAGGGACGACCACAAGGTGGACATGCACACTGGATGCACATTTAACCATCGCTATGTGAAATCCAATCCAAAGGAAGTGGAGAATGCCACTTGGATGCTTACTGTTTTTCATTGTTTCGGTCAATATTTCTGCCTTCACTTTGAAGCCTTTCAGCTTGGCATGGCCCCAGTCTACATGGCTTTCCTTCGATTCATGGGAGATGAGAATGAGGCACGAACCTACAGCTACAGTCTCGAAGTTGGTGGATATGGGCGAAAACTGATATGGGAGGGTACACCACGAAGTATTCGAGATAGTCATCGAAAAGTCAGGGACAGCCACGATGGATTAATTATTCAAAGAAATATGGCTCTCTTCTTCTCAGGCGGGGATAGAAAGGAACTGAAGCTAAGAGTTACAGGAAGGATATGGAAGGAACAAAACCCAGATGCTGGAGCCTGCATTCCGAATCTTTGTAGCTAA 1002 47.01 MDLDSIECVSSSDGFGEDDIHLHHTLHPYSHSHHHPELSASKPRNGNNNSAVNAPTAIAIAPSTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYFSLGCPEIFPYYGKLKHEALCNFRPYSCPYAGSECSAVGDISFLVAHLRDDHKVDMHTGCTFNHRYVKSNPKEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGACIPNLCS 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12803589 12806449 + CmoCh18G013620.1 Cmo18g01362 403135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01362 333 MobiDBLite consensus disorder prediction 27 52 - -
Cmo18g01362 333 SUPERFAMILY RING/U-box 62 114 - -
Cmo18g01362 333 Pfam Seven in absentia protein family 114 313 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cmo18g01362 333 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 177 313 IPR008974 GO:0005515
Cmo18g01362 333 ProSiteProfiles Zinc finger SIAH-type profile. 125 185 IPR013010 GO:0008270
Cmo18g01362 333 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 325 - -
Cmo18g01362 333 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 325 - -
Cmo18g01362 333 CDD RING-HC_SIAHs 70 108 - -
Cmo18g01362 333 ProSiteProfiles Zinc finger RING-type profile. 72 108 IPR001841 -
Cmo18g01362 333 CDD Sina 186 314 - -
Cmo18g01362 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 176 IPR013083 -
Cmo18g01362 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 124 IPR013083 -
Cmo18g01362 333 SUPERFAMILY TRAF domain-like 125 317 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00056 Cmo-Chr16:228802 Cmo18g01362 Cmo-Chr18:12803589 0 dispersed
Cmo18g01361 Cmo-Chr18:12800605 Cmo18g01362 Cmo-Chr18:12803589 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01362 K04506 - csv:101215696 653.669