Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01371 ATGGAGAGACCGGAGTACATCAAAATACAAAATTTGGAAGTAGCCTCTTCGCAGACATGTCCAACTCCTAGGAGGAAGAAGAAGAAGAAGAAGAAGAGCAACAACATGAACAAAAGAAGGTTTAGTGATGAACAAATCAGGTCACTGGAGTCCATATTTTATTCATCGGATTCAAAGCTTGATTCGAGGAAGAAGGTGCAGCTGGCAGCCGAGTTGGGACTCCAACCTCGCCAGATTTCTATATGGTTTCAGAATAGAAGAGCAAGATGGAAGTCGAAGCAGATGGAGAACGATTTCAGGAGCCTCAGAGCTAGTTATGATAATCTAGCGTCTCAGTTTAGAACTTTACAGGAAGAGAACAACTCCTTGCTCTCACAGTTGCAAAAGTTAGGCGAGCTTGTTCAAGAAGAACCTGGTGAGGGATGTTATTCCACTAATTTTGGAAAAAACGCTGATGAGAATCAAGCAAAGCTAGAAATCTTAGAAGATGAACCGGAACAGAATGGAGTCACGTATTTGAACAACAATTCAAAGACTGAGAATGGAGGAGGACATCAAGCGACCCATTTGTTGGAAGGCAGAAGCAACGGCAATAGCCACAGTGAGGAGCAAGTATGGTGCGATTTTGAGTCGGATGGTGGTGTCATCTTTGAATATCAGCCGTGTAGCAGTTTGCACTTGCAGGGGCTAAGTTTCTGGGGATGA 705 43.69 MERPEYIKIQNLEVASSQTCPTPRRKKKKKKKSNNMNKRRFSDEQIRSLESIFYSSDSKLDSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDFRSLRASYDNLASQFRTLQEENNSLLSQLQKLGELVQEEPGEGCYSTNFGKNADENQAKLEILEDEPEQNGVTYLNNNSKTENGGGHQATHLLEGRSNGNSHSEEQVWCDFESDGGVIFEYQPCSSLHLQGLSFWG 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12831625 12832408 - CmoCh18G013710.1 Cmo18g01371 403144

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01371 234 MobiDBLite consensus disorder prediction 12 43 - -
Cmo18g01371 234 CDD homeodomain 40 94 IPR001356 GO:0003677
Cmo18g01371 234 Pfam Homeodomain 38 91 IPR001356 GO:0003677
Cmo18g01371 234 MobiDBLite consensus disorder prediction 176 197 - -
Cmo18g01371 234 ProSiteProfiles 'Homeobox' domain profile. 32 93 IPR001356 GO:0003677
Cmo18g01371 234 SMART HOX_1 35 97 IPR001356 GO:0003677
Cmo18g01371 234 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 10 233 - -
Cmo18g01371 234 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 10 233 IPR045224 GO:0003700
Cmo18g01371 234 Gene3D - 36 98 - -
Cmo18g01371 234 Coils Coil 99 133 - -
Cmo18g01371 234 PRINTS Lambda-repressor HTH signature 64 73 IPR000047 GO:0003677
Cmo18g01371 234 PRINTS Lambda-repressor HTH signature 73 89 IPR000047 GO:0003677
Cmo18g01371 234 ProSitePatterns 'Homeobox' domain signature. 68 91 IPR017970 GO:0000981|GO:0006355
Cmo18g01371 234 MobiDBLite consensus disorder prediction 22 36 - -
Cmo18g01371 234 Pfam Homeobox associated leucine zipper 93 135 IPR003106 GO:0006355|GO:0043565
Cmo18g01371 234 SUPERFAMILY Homeodomain-like 31 94 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01371 K09338 HD-ZIP; homeobox-leucine zipper protein - csv:101209671 191.815
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo16g00028 Cmo18g01371 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g01371 Cmo-Chr18:12831625 Cmo04g00899 Cmo-Chr4:4526610 4.83E-29 dispersed
Cmo14g02196 Cmo-Chr14:15656407 Cmo18g01371 Cmo-Chr18:12831625 1.54E-35 wgd
Cmo16g00028 Cmo-Chr16:137218 Cmo18g01371 Cmo-Chr18:12831625 1.30E-94 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g986 . . Bda05g00138 Bda07g01954 . . Bma10g01316 Bma14g02025 Cmo16g00028 Cmo18g01371 . . . . . . . . . . . . . . . . . . . . . Cone1ag1012 Cone5ag0719 . . . . . . . . . . . . . . . . . Cma16g00024 Cma18g01338 Car16g00022 Car18g01252 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001722 2 3 1 3 2 2 3 2 2 1 2 2 3 2 2 3 2 3 0 2 2 2 2 2 2 2 2 5 2 3 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11575 PF00046 Homeodomain 1.40E-17 CL0123 Cmo TF