Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01373 ATGTTGAGGGCGAGGGGAAAAGGGGAGGGGAAGAGGAAGACGGAATTTCATCGCATCGGTCATTTCTGGGATGCTGTGCCACTCTCATCTCCACCGCAATCCGACGATCTGATTCTGAGCAGCCCACGGGTTTTCCTTCTCTGTTCGATCCTCTTCAATTCTGCTTCTGCTCCCTCACTTCGATCTCCTGCTGCCTTCACTCCTTTACCAATGGAAATAATAACACTGCAAAACAACCGCCTTTTCACCCCTACTCTTTCTCTTATCATGGCGGTTCCTGAGAATGTTGGACCCAAAATCGGTTCTCCAAGTCAAACTTTGGAAAATACCATGGTTTCCTCCGATTCTAATGACCCCAACGATGTTGAGACTCAGAAGCCCAACAGCGATTCTACGGTCCCCATGAATGGAGAACCCGACTTTCATTCCAACGGCAATGATCACGATGTACAGATGAAGGCACAGCTTCAGGAGAGAGCAGCTACCGCTGCTTCCTTTTCACTTCCTTCAGTCAATTTCAAGCCTCAAATGCCTCAGATGCCCAACGGGTTTGAAGCTAATGCCCAGACGCTGATGGTGAAGTCTGCTGCCGGGTATGGGATGAATCAGAGGCCTAACGGAGTGATAAATGGAGCGGATGGAGGAGAAAACTTTAAGAGGGACATGAGCGATCTGGAGGACTTACTATCCAAATTGAATCCCATGGCTGAGGAATTTATCCCTCCTTCGCTTGCTAAAAATTTGTCTGGTTACTTCGGCGCTGGTGGGCTTGGGTATACTAACGACTTTCTATTGCAAGCTAATTCTGTCAACAACGAAGGGCATATGAATCGAAGGAAGAAGAATGGTTTTAGCCAAGGGAGAAGGAGGATGAATAATAAGATGAATGCGGTGAAGAGGGATGAGATGACCCGGAGGACGGTCTATGTATCAGACATCGATCAGCAGGTGACTGAAGAGCTACTTGCTACTGTCTTTGCTGGCTGTGGAGAGGTTGTTGACTGTCGTATCTGCGGTGATCCCAACTCCATTCTTCATTTTGCCTTCATTGAGTTCACGGATGAAGAGGGTGCAAGAGCTTCCTTGAGTCTTTCAGGGACAGTTCTTGGTTTCTATCCAGTTAGAGTGCTGCCCTCAAAAACTGCCATAGCACCTGTCAATCCTGACTTTTTACCCAGGTCGGATGATGAACGTGAGATGTGCTCAAGAACTATCTATTGTACAAATATTGACAAGAAGGTTACTCAAGCAGAGGTCAAGCTGTTCTTTGAATCACTATGTGGAGAGGTTCAGCGCCTTAGGCTACTTGGAGATTATCATCATTCCACTCGTATAGCTTTTGTTGAGTTTACCATGGCTGAGAGTGCAATTGCTGCACTTAATTGCAGTGGAGTGGTGTTGGGTTCCCTGCCAATAAGGGTAAGCCCATCAAAGACCCCAGTTCGCCCTCGCTCTCCTCGTGCCCAGCTGAACTGA 1476 47.63 MLRARGKGEGKRKTEFHRIGHFWDAVPLSSPPQSDDLILSSPRVFLLCSILFNSASAPSLRSPAAFTPLPMEIITLQNNRLFTPTLSLIMAVPENVGPKIGSPSQTLENTMVSSDSNDPNDVETQKPNSDSTVPMNGEPDFHSNGNDHDVQMKAQLQERAATAASFSLPSVNFKPQMPQMPNGFEANAQTLMVKSAAGYGMNQRPNGVINGADGGENFKRDMSDLEDLLSKLNPMAEEFIPPSLAKNLSGYFGAGGLGYTNDFLLQANSVNNEGHMNRRKKNGFSQGRRRMNNKMNAVKRDEMTRRTVYVSDIDQQVTEELLATVFAGCGEVVDCRICGDPNSILHFAFIEFTDEEGARASLSLSGTVLGFYPVRVLPSKTAIAPVNPDFLPRSDDEREMCSRTIYCTNIDKKVTQAEVKLFFESLCGEVQRLRLLGDYHHSTRIAFVEFTMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRSPRAQLN 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12834456 12838954 - CmoCh18G013730.1 Cmo18g01373 403146

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01373 491 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 403 479 IPR000504 GO:0003723
Cmo18g01373 491 SMART rrm1_1 307 377 IPR000504 GO:0003723
Cmo18g01373 491 SMART rrm1_1 404 475 IPR000504 GO:0003723
Cmo18g01373 491 SUPERFAMILY RNA-binding domain, RBD 270 382 IPR035979 GO:0003676
Cmo18g01373 491 MobiDBLite consensus disorder prediction 99 139 - -
Cmo18g01373 491 Pfam Ataxin-2 C-terminal region 230 243 IPR009818 -
Cmo18g01373 491 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 90 491 - -
Cmo18g01373 491 CDD RRM1_CID8_like 305 383 IPR034823 -
Cmo18g01373 491 SUPERFAMILY RNA-binding domain, RBD 392 485 IPR035979 GO:0003676
Cmo18g01373 491 MobiDBLite consensus disorder prediction 97 139 - -
Cmo18g01373 491 CDD RRM2_CID8_like 399 480 IPR034825 -
Cmo18g01373 491 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 405 472 IPR000504 GO:0003723
Cmo18g01373 491 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 370 IPR000504 GO:0003723
Cmo18g01373 491 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 90 491 - -
Cmo18g01373 491 Gene3D - 266 383 IPR012677 -
Cmo18g01373 491 Gene3D - 389 487 IPR012677 -
Cmo18g01373 491 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 381 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01373 - - - cpep:111801994 827.009
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo16g00026 Cmo18g01373 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00693 Cmo-Chr4:3444717 Cmo18g01373 Cmo-Chr18:12834456 8.98E-98 dispersed
Cmo16g00493 Cmo-Chr16:2372003 Cmo18g01373 Cmo-Chr18:12834456 2.41E-102 dispersed
Cmo18g01373 Cmo-Chr18:12834456 Cmo04g00516 Cmo-Chr4:2557223 7.48E-09 dispersed
Cmo16g00026 Cmo-Chr16:129037 Cmo18g01373 Cmo-Chr18:12834456 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g974 . . Bda05g00141 Bda07g01957 . . Bma10g01318 Bma14g02028 Cmo16g00026 Cmo18g01373 . . . . . . Cpe14g00018 . . . . . . . . . . . . . . . . . . . . . . Blo07g00318 Blo09g00003 . . . . . . . . . Cma16g00021 Cma18g01339 Car16g00021 . Cpe09g00011 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003779 2 1 2 2 1 1 1 1 1 2 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 4 1 45