Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01380 ATGGGTGAAGAAGCTGTTAAGATGGAAGAAGCAAAGGTAGAAGAGACGAAGGAAGAACTGAAAGTGGAGAAACCCAAGCCTTGTCCTCCTTCCGTGCTGTTGTTTGTGGATCTGCATTGCACAGGGTGTGCTAAGAAAATTGAGAAGTCCCTCATGAGAATAACAGGAGTTGAAGGGGTGAGCACTAATGTGGCCAAAAATGAATTAACCATCAAGGGAATAGTAGACCCACACGCGGTTTGCGCCAAAATCACCAAGAAAACCAAGAGAGTAGCCAAAGTGTTGTCCCCATTGCCACCAGCTGAGGGCGAACCCACCGGCCCCCAACTTGTGAACTCCCAGGTGGGTGGATTGACGGTGGTGGAATTGAAGGTTAACATGCACTGCGAGGCCTGTGCCCTGCAACTCAAAAGAAAGATACTCAAAATGAGAGGAGTGCAAACAGCATGGACGGAACTGAGCACGGGGAAAGTGGTGGTAACAGGAAGCATGGATGGGAGTAAGCTAGTGGAGTACGTGTATAGACGCACCAAAAAGCAAGCCAGAATAGTGCCACAGCCGGAACCTCCTCAGCAAGAAAACAAGCCCCCTCAAGAAGAACCACCAAAAGCCGAAGAAAAGAAAGAAGATGAGACAAAGACAAAGACAGAAGACGCGCTACCCCAAGGAACAGACACGAACAATAACAAGGAGGAAGAACAACCAAAACCGACGGAACCAGCGGAACCAGGGGAACCAGGGGAAGAGACGAAGGCAAGTAGTGTGGAAGCGAAGCCGGCGGAGGGCGGAGAGGAGAAGATTGTTATGGATGAGGTAGACCCTGAAATCATGAAGAGGATGATTTACCATAATTATCAGTATCAGCCGCTGTACGTTATCGAACCAATTCCTCCACCGCCTCAGCTATTCAGCGATGAGAATCCCAATGCTTGCTGCATCCAGTAA 945 49.21 MGEEAVKMEEAKVEETKEELKVEKPKPCPPSVLLFVDLHCTGCAKKIEKSLMRITGVEGVSTNVAKNELTIKGIVDPHAVCAKITKKTKRVAKVLSPLPPAEGEPTGPQLVNSQVGGLTVVELKVNMHCEACALQLKRKILKMRGVQTAWTELSTGKVVVTGSMDGSKLVEYVYRRTKKQARIVPQPEPPQQENKPPQEEPPKAEEKKEDETKTKTEDALPQGTDTNNNKEEEQPKPTEPAEPGEPGEETKASSVEAKPAEGGEEKIVMDEVDPEIMKRMIYHNYQYQPLYVIEPIPPPPQLFSDENPNACCIQ 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12856335 12858056 - CmoCh18G013800.1 Cmo18g01380 403153

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01380 314 SUPERFAMILY HMA, heavy metal-associated domain 32 90 IPR036163 GO:0046872
Cmo18g01380 314 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 9 7 313 IPR044258 GO:0046872
Cmo18g01380 314 MobiDBLite consensus disorder prediction 180 269 - -
Cmo18g01380 314 MobiDBLite consensus disorder prediction 229 269 - -
Cmo18g01380 314 SUPERFAMILY HMA, heavy metal-associated domain 119 175 IPR036163 GO:0046872
Cmo18g01380 314 Pfam Heavy-metal-associated domain 124 171 IPR006121 GO:0046872
Cmo18g01380 314 Pfam Heavy-metal-associated domain 35 86 IPR006121 GO:0046872
Cmo18g01380 314 Coils Coil 3 23 - -
Cmo18g01380 314 CDD HMA 38 92 IPR006121 GO:0046872
Cmo18g01380 314 ProSiteProfiles Heavy-metal-associated domain profile. 30 86 IPR006121 GO:0046872
Cmo18g01380 314 MobiDBLite consensus disorder prediction 198 218 - -
Cmo18g01380 314 Gene3D - 31 92 - -
Cmo18g01380 314 Gene3D - 118 183 - -
Cmo18g01380 314 ProSiteProfiles Heavy-metal-associated domain profile. 126 160 IPR006121 GO:0046872
Cmo18g01380 314 CDD HMA 122 182 IPR006121 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01380 - - - cmos:111430912 299.286
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo16g00013 Cmo18g01380 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00025 Cmo-Chr11:107890 Cmo18g01380 Cmo-Chr18:12856335 1.88E-32 dispersed
Cmo13g00848 Cmo-Chr13:7815071 Cmo18g01380 Cmo-Chr18:12856335 7.40E-44 dispersed
Cmo18g00228 Cmo-Chr18:1491157 Cmo18g01380 Cmo-Chr18:12856335 1.27E-40 dispersed
Cmo18g01380 Cmo-Chr18:12856335 Cmo14g00215 Cmo-Chr14:979115 9.65E-08 dispersed
Cmo15g00945 Cmo-Chr15:4866054 Cmo18g01380 Cmo-Chr18:12856335 6.84E-07 transposed
Cmo16g00013 Cmo-Chr16:89520 Cmo18g01380 Cmo-Chr18:12856335 3.02E-118 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g949 . . . . . . . . Cmo16g00013 Cmo18g01380 . . . . . . Cpe14g00012 . . . . . . . . . . . . . . Cone1ag1031 Cone5ag0738 . . . . . . . . . . . . . . . . . Cma16g00012 Cma18g01346 Car16g00010 Car18g01258 Cpe09g00006 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013892 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 2 0 2 1 0 0 1 1 1 1 0 1 2 2 2 20