Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00061 ATGGAAGAGCTTGAAGAAGCTAACAGAGCCGCCATAGATAGCTGCCATGGAGTTTTGAATCTTTTAGCTCAGCCTTCTCCTCAAGAACAAGGTGAGCTGAGGAAGAATTTAATGGTGGAAACTGGAGAGGCTGTTTTTAAGCTCAAGAAAGTGGTATCTCTTTTGAATTCTGGGTTTGGTTATGCAAAAGTTAGAAGATTCAAGAACATTCCTCTGCCTTTACCCCAAAAACTTCTCTTAGATCCTCCAAACAATGGTTTGAATGGTAAAGTTTCAGTTTTTTTGGGAAACCCAGATTTGGAAATGGATCAAAATCATAAGAATTCCCTCAAAATTCATAAACAAGCTGCTCCATCTTTGAACTTTAGCTTCCCCCAGCAACAGCAGCAGCAGAGGAAGCAAGCAGAGATGATGTTTCTTAGGAGTAACAGTGGGATGAATATGAATTTTGATGCTTCCAAGTGCACATTGACAATGTCATCTGCTAGATCTTTTATTTCTTCGTTGAGTATGGATGGGAGCGTTGCGGACGGGAGCTCGTTCCATTTGATCGGACCGTCGTCGACGATGTCGGGCGATAACAAGAGGAGGTTTTCTGGAAGGGGAGATGAAGGGAGCTTGAAATGTGGTAGCACTGGCAAGTGTCATTGCTCAAAGAAGAGGAAACATCGAGTGAAGAGATCAATTAAGGTTCCTGCTATAAGTAACAAACTTGCTGATATCCCTTCTGATGATTATTCATGGAGGAAATATGGGCAGAAGCCAATTAAGGGTTCTCCTCATCCCAGGGGTTACTACAAATGCAGCAGCATGAGAGGTTGTCCAGCGAGAAAGCACGTCGAGCGATGCTTAGAAGACCCGTCGATGCTTATCGTAACGTACGAAGGAGAGCATAATCACCCGAAAATGTCGACGCAATCTGCACACACTTAG 933 43.52 MEELEEANRAAIDSCHGVLNLLAQPSPQEQGELRKNLMVETGEAVFKLKKVVSLLNSGFGYAKVRRFKNIPLPLPQKLLLDPPNNGLNGKVSVFLGNPDLEMDQNHKNSLKIHKQAAPSLNFSFPQQQQQQRKQAEMMFLRSNSGMNMNFDASKCTLTMSSARSFISSLSMDGSVADGSSFHLIGPSSTMSGDNKRRFSGRGDEGSLKCGSTGKCHCSKKRKHRVKRSIKVPAISNKLADIPSDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEDPSMLIVTYEGEHNHPKMSTQSAHT 310
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
19 334750 338119 + CmoCh19G000610.1 Cmo19g00061 403221
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00061 310 Gene3D WRKY domain 226 302 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo19g00061 310 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 3 310 IPR044810 GO:0003700
Cmo19g00061 310 SUPERFAMILY WRKY DNA-binding domain 240 302 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo19g00061 310 ProSiteProfiles WRKY domain profile. 237 303 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo19g00061 310 PANTHER WRKY TRANSCRIPTION FACTOR 74-RELATED 3 310 - -
Cmo19g00061 310 SMART WRKY_cls 242 302 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo19g00061 310 Pfam Plant zinc cluster domain 206 240 IPR018872 -
Cmo19g00061 310 Pfam WRKY DNA -binding domain 244 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cmo08g00311 Cmo19g00061 CCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00061 Cmo-Chr19:334750 Cmo17g01197 Cmo-Chr17:9602611 2.05E-111 dispersed
Cmo19g00061 Cmo-Chr19:334750 Cmo02g01814 Cmo-Chr2:10274315 3.52E-123 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11579 PF03106 WRKY 9.90E-27 CL0274 Cmo TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00061 - - cmax:111466947 610.527