Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo19g00061 | ATGGAAGAGCTTGAAGAAGCTAACAGAGCCGCCATAGATAGCTGCCATGGAGTTTTGAATCTTTTAGCTCAGCCTTCTCCTCAAGAACAAGGTGAGCTGAGGAAGAATTTAATGGTGGAAACTGGAGAGGCTGTTTTTAAGCTCAAGAAAGTGGTATCTCTTTTGAATTCTGGGTTTGGTTATGCAAAAGTTAGAAGATTCAAGAACATTCCTCTGCCTTTACCCCAAAAACTTCTCTTAGATCCTCCAAACAATGGTTTGAATGGTAAAGTTTCAGTTTTTTTGGGAAACCCAGATTTGGAAATGGATCAAAATCATAAGAATTCCCTCAAAATTCATAAACAAGCTGCTCCATCTTTGAACTTTAGCTTCCCCCAGCAACAGCAGCAGCAGAGGAAGCAAGCAGAGATGATGTTTCTTAGGAGTAACAGTGGGATGAATATGAATTTTGATGCTTCCAAGTGCACATTGACAATGTCATCTGCTAGATCTTTTATTTCTTCGTTGAGTATGGATGGGAGCGTTGCGGACGGGAGCTCGTTCCATTTGATCGGACCGTCGTCGACGATGTCGGGCGATAACAAGAGGAGGTTTTCTGGAAGGGGAGATGAAGGGAGCTTGAAATGTGGTAGCACTGGCAAGTGTCATTGCTCAAAGAAGAGGAAACATCGAGTGAAGAGATCAATTAAGGTTCCTGCTATAAGTAACAAACTTGCTGATATCCCTTCTGATGATTATTCATGGAGGAAATATGGGCAGAAGCCAATTAAGGGTTCTCCTCATCCCAGGGGTTACTACAAATGCAGCAGCATGAGAGGTTGTCCAGCGAGAAAGCACGTCGAGCGATGCTTAGAAGACCCGTCGATGCTTATCGTAACGTACGAAGGAGAGCATAATCACCCGAAAATGTCGACGCAATCTGCACACACTTAG | 933 | 43.52 | MEELEEANRAAIDSCHGVLNLLAQPSPQEQGELRKNLMVETGEAVFKLKKVVSLLNSGFGYAKVRRFKNIPLPLPQKLLLDPPNNGLNGKVSVFLGNPDLEMDQNHKNSLKIHKQAAPSLNFSFPQQQQQQRKQAEMMFLRSNSGMNMNFDASKCTLTMSSARSFISSLSMDGSVADGSSFHLIGPSSTMSGDNKRRFSGRGDEGSLKCGSTGKCHCSKKRKHRVKRSIKVPAISNKLADIPSDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEDPSMLIVTYEGEHNHPKMSTQSAHT | 310 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 19 | 334750 | 338119 | + | CmoCh19G000610.1 | Cmo19g00061 | 403221 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo19g00061 | 310 | Gene3D | WRKY domain | 226 | 302 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
| Cmo19g00061 | 310 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 3 | 310 | IPR044810 | GO:0003700 | |
| Cmo19g00061 | 310 | SUPERFAMILY | WRKY DNA-binding domain | 240 | 302 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
| Cmo19g00061 | 310 | ProSiteProfiles | WRKY domain profile. | 237 | 303 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
| Cmo19g00061 | 310 | PANTHER | WRKY TRANSCRIPTION FACTOR 74-RELATED | 3 | 310 | - | - | |
| Cmo19g00061 | 310 | SMART | WRKY_cls | 242 | 302 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
| Cmo19g00061 | 310 | Pfam | Plant zinc cluster domain | 206 | 240 | IPR018872 | - | |
| Cmo19g00061 | 310 | Pfam | WRKY DNA -binding domain | 244 | 301 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo08g00311 | Cmo19g00061 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo19g00061 | Cmo-Chr19:334750 | Cmo17g01197 | Cmo-Chr17:9602611 | 2.05E-111 | dispersed | |
| Cmo19g00061 | Cmo-Chr19:334750 | Cmo02g01814 | Cmo-Chr2:10274315 | 3.52E-123 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 11579 | PF03106 | WRKY | 9.90E-27 | CL0274 | Cmo | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo19g00061 | - | - | cmax:111466947 | 610.527 |