Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo19g00089 | ATGGCGTCTTCTTCTTCTTCTTCTAGTACTGCAAATAGTAGCGTGTCGGGCGGCGGCGGCGGTGGCGGTGGTGGTGGCTCTCCTTGTGGAGCATGCAAGTTTCTGCGGCGGAAATGTGTGGCTGAGTGTATTTTTGCTCCTTACTTTAGCTCGGAACAAGGGGCTGCAAGATTTGCCGCCGTTCATAAAGTGTTTGGGGCTAGTAATGTGTCTAAGTTGCTGCATCATGTCCCTGCTCATGATCGCTGTGAGGCTGTTGTTACTATTGCTTATGAAGCTCAAGCAAGGATTCTTGACCCTGTTTATGGCTGTGTCGCCCATATTTTTGCTCTCCAACAACAGGTGGCATGCTTACAAGCACAATTGATGCAAGCCAAGGCTCAACTTGCCCAAACCCTGATGGAATCAGGAGGCAACATGGAGCTTCAATGGACAGGAAGCTTCAATAACAATCTCTCGAATGGAATCCCAAGCAATTATGAGACTCAAATTATGAACCCAGCAGTTTCCCCACAGAGCTCAGTGGAATCAGCAGCCAACAACGATGCAGCATTAATGTTCATGAACCATTATCAAGAGAGCCAAACATTGGGTAGAAGAAGATCAGCTTCATGTCATGGTGATCTTGGGGAGCTTCAAGCTTTGGCCCTTAGAATGATGAGAAACTAA | 669 | 47.38 | MASSSSSSSTANSSVSGGGGGGGGGGSPCGACKFLRRKCVAECIFAPYFSSEQGAARFAAVHKVFGASNVSKLLHHVPAHDRCEAVVTIAYEAQARILDPVYGCVAHIFALQQQVACLQAQLMQAKAQLAQTLMESGGNMELQWTGSFNNNLSNGIPSNYETQIMNPAVSPQSSVESAANNDAALMFMNHYQESQTLGRRRSASCHGDLGELQALALRMMRN | 222 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 498897 | 500847 | + | CmoCh19G000890.1 | Cmo19g00089 | 403249 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo19g00089 | 222 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Cmo19g00089 | 222 | Pfam | Lateral organ boundaries (LOB) domain | 28 | 126 | IPR004883 | - | |
Cmo19g00089 | 222 | ProSiteProfiles | LOB domain profile. | 27 | 129 | IPR004883 | - | |
Cmo19g00089 | 222 | Coils | Coil | 108 | 135 | - | - | |
Cmo19g00089 | 222 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Cmo19g00089 | 222 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 14 | 221 | - | - | |
Cmo19g00089 | 222 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 16 | 14 | 221 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g01801 | Cmo19g00089 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g01801 | Cmo-Chr2:10226987 | Cmo19g00089 | Cmo-Chr19:498897 | 5.46E-87 | dispersed | |
Cmo17g00031 | Cmo-Chr17:140116 | Cmo19g00089 | Cmo-Chr19:498897 | 9.13E-54 | dispersed | |
Cmo17g00032 | Cmo-Chr17:146651 | Cmo19g00089 | Cmo-Chr19:498897 | 1.54E-48 | dispersed | |
Cmo19g00089 | Cmo-Chr19:498897 | Cmo19g00091 | Cmo-Chr19:504806 | 2.57E-56 | proximal | |
Cmo19g00089 | Cmo-Chr19:498897 | Cmo02g01800 | Cmo-Chr2:10225373 | 1.87E-56 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11583 | PF03195 | LOB | 5.60E-37 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo19g00089 | K13944 | - | csv:101214521 | 281.182 |