Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00089 ATGGCGTCTTCTTCTTCTTCTTCTAGTACTGCAAATAGTAGCGTGTCGGGCGGCGGCGGCGGTGGCGGTGGTGGTGGCTCTCCTTGTGGAGCATGCAAGTTTCTGCGGCGGAAATGTGTGGCTGAGTGTATTTTTGCTCCTTACTTTAGCTCGGAACAAGGGGCTGCAAGATTTGCCGCCGTTCATAAAGTGTTTGGGGCTAGTAATGTGTCTAAGTTGCTGCATCATGTCCCTGCTCATGATCGCTGTGAGGCTGTTGTTACTATTGCTTATGAAGCTCAAGCAAGGATTCTTGACCCTGTTTATGGCTGTGTCGCCCATATTTTTGCTCTCCAACAACAGGTGGCATGCTTACAAGCACAATTGATGCAAGCCAAGGCTCAACTTGCCCAAACCCTGATGGAATCAGGAGGCAACATGGAGCTTCAATGGACAGGAAGCTTCAATAACAATCTCTCGAATGGAATCCCAAGCAATTATGAGACTCAAATTATGAACCCAGCAGTTTCCCCACAGAGCTCAGTGGAATCAGCAGCCAACAACGATGCAGCATTAATGTTCATGAACCATTATCAAGAGAGCCAAACATTGGGTAGAAGAAGATCAGCTTCATGTCATGGTGATCTTGGGGAGCTTCAAGCTTTGGCCCTTAGAATGATGAGAAACTAA 669 47.38 MASSSSSSSTANSSVSGGGGGGGGGGSPCGACKFLRRKCVAECIFAPYFSSEQGAARFAAVHKVFGASNVSKLLHHVPAHDRCEAVVTIAYEAQARILDPVYGCVAHIFALQQQVACLQAQLMQAKAQLAQTLMESGGNMELQWTGSFNNNLSNGIPSNYETQIMNPAVSPQSSVESAANNDAALMFMNHYQESQTLGRRRSASCHGDLGELQALALRMMRN 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 498897 500847 + CmoCh19G000890.1 Cmo19g00089 403249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00089 222 MobiDBLite consensus disorder prediction 1 24 - -
Cmo19g00089 222 Pfam Lateral organ boundaries (LOB) domain 28 126 IPR004883 -
Cmo19g00089 222 ProSiteProfiles LOB domain profile. 27 129 IPR004883 -
Cmo19g00089 222 Coils Coil 108 135 - -
Cmo19g00089 222 MobiDBLite consensus disorder prediction 1 17 - -
Cmo19g00089 222 PANTHER LOB DOMAIN CONTAINING PROTEIN 14 221 - -
Cmo19g00089 222 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 14 221 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01801 Cmo19g00089 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01801 Cmo-Chr2:10226987 Cmo19g00089 Cmo-Chr19:498897 5.46E-87 dispersed
Cmo17g00031 Cmo-Chr17:140116 Cmo19g00089 Cmo-Chr19:498897 9.13E-54 dispersed
Cmo17g00032 Cmo-Chr17:146651 Cmo19g00089 Cmo-Chr19:498897 1.54E-48 dispersed
Cmo19g00089 Cmo-Chr19:498897 Cmo19g00091 Cmo-Chr19:504806 2.57E-56 proximal
Cmo19g00089 Cmo-Chr19:498897 Cmo02g01800 Cmo-Chr2:10225373 1.87E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11583 PF03195 LOB 5.60E-37 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00089 K13944 - csv:101214521 281.182