Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo19g00091 | ATGACAGGTTCTGGTTCTCCCTGTGGAGCCTGTAAGTTCTTGAGAAGAAAATGTGTCAGAGGCTGCGTTTTTGCGCCATATTTCTGCCATGAACAAGGCGCTACTCATTTTGCTGCTATTCATAAGGTGTTTGGCGCTAGCAATGTGTCTAAGCTTCTTGCTCGTTTGCCTGTTAGTGAGCGCTGTGAGGCTGCTGTTACTATCTCTTATGAAGCTCAAGCTAGGCTTCAAGATCCTATCTATGGCTGTGTTTCTCATATCTTTGCCCTCCAACAACAGGTTGTGAGTCTTCAAGCACAACTAGCTTCTCTTAAGGAACAAGCAGCAGAAAACATGATGAACGTATCTGGTAATAGAGGTGAGGCTGAGAAGAATAGCAGAAAGGTTCCTTGTCATCCACAAGATCTCCATAGCTGGTTTCAGTCAGAGCAACCGAACGTAATGCTCGAGTTCAATCCGAATCCGACTCGGAACAATTCGGCATCGAACCCTTATTATGATGAGAATTATAGCATTATGGTTAATTCTCAGTCCAATGAGAACTATGAGCATCACATGGCTAAAATGGAGGAAAGTGGATCATATGGAAGCTTTGAAGAAACCTCAGGCTATTCCATGTATACTCTTGATCACTTGCATTCAAATGTTCAACAATGGAGCTTCAATGAGTCTGCTGATGATTTACAATCAGTTGCTTTTGGTAATAGGCATTGGTAA | 717 | 42.68 | MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLARLPVSERCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVSLQAQLASLKEQAAENMMNVSGNRGEAEKNSRKVPCHPQDLHSWFQSEQPNVMLEFNPNPTRNNSASNPYYDENYSIMVNSQSNENYEHHMAKMEESGSYGSFEETSGYSMYTLDHLHSNVQQWSFNESADDLQSVAFGNRHW | 238 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 504806 | 506060 | - | CmoCh19G000910.1 | Cmo19g00091 | 403251 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo19g00091 | 238 | ProSiteProfiles | LOB domain profile. | 6 | 108 | IPR004883 | - | |
Cmo19g00091 | 238 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 1 | 235 | - | - | |
Cmo19g00091 | 238 | Coils | Coil | 87 | 114 | - | - | |
Cmo19g00091 | 238 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN-RELATED | 1 | 235 | - | - | |
Cmo19g00091 | 238 | Pfam | Lateral organ boundaries (LOB) domain | 7 | 105 | IPR004883 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g01800 | Cmo19g00091 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g01800 | Cmo-Chr2:10225373 | Cmo19g00091 | Cmo-Chr19:504806 | 1.12E-151 | dispersed | |
Cmo08g00269 | Cmo-Chr8:1684199 | Cmo19g00091 | Cmo-Chr19:504806 | 3.40E-57 | dispersed | |
Cmo19g00089 | Cmo-Chr19:498897 | Cmo19g00091 | Cmo-Chr19:504806 | 2.57E-56 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11584 | PF03195 | LOB | 5.40E-36 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo19g00091 | K13945 | - | csv:101214764 | 423.705 |