Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00097 ATGGAATCCTCTTATTTTTCGTTCTCCGATTCCGATTTCTCGACGGGATCTTCGTTCGGATCGGCCGAATCGTCGTTCTCATGGAGCGAATTTTTCCCGATTCCACTGCCGGATGAGTTTCTCGGAAATCAACCGGAATCGGAATCGAAAATTGCGGTGAAGGAAGAAATCGAAGTGAGTTCGATCGATTTCGCGGAGGAGAAACAGAGGAAGACGACGGCGGAGAAGAGTTACAGAGGAGTAAGGCGACGGCCATGGGGAAAATACGCGGCGGAGATTAGGGATTCAACGAGGCATGGAGTTAGGGTTTGGCTTGGAACATTTGATAGCGCGGAAGCCGCCGCGTTAGCGTATGATCAAGCGGCATTTTCAATGAGAGGAGCACTGGCGGTTCTGAATTTTCCGGTGGAAATGGTGAGGGAATCACTCCAGGATATTAAGTATCAACTGGAAGAAGGATGCTCGCCGGTGGTGGCTTTGAAGAGAAAACACTCTCTGAGAAGGAAGTCGGCGGCGGCGGCGGCGGTGGAGAAGAAGAAGATGAAGAAGAAGAAGAATATGGTGATTTTTGAAGATTTGGGAACAGAGTATTTGGAAGAACTGTTGATGCTAAGTTCATATGAGAGTTGTAGCATCAATCCCTTCTGA 648 48.61 MESSYFSFSDSDFSTGSSFGSAESSFSWSEFFPIPLPDEFLGNQPESESKIAVKEEIEVSSIDFAEEKQRKTTAEKSYRGVRRRPWGKYAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGALAVLNFPVEMVRESLQDIKYQLEEGCSPVVALKRKHSLRRKSAAAAAVEKKKMKKKKNMVIFEDLGTEYLEELLMLSSYESCSINPF 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 548824 549471 + CmoCh19G000970.1 Cmo19g00097 403257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00097 215 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Cmo19g00097 215 PRINTS Ethylene responsive element binding protein signature 101 117 IPR001471 GO:0003700|GO:0006355
Cmo19g00097 215 SUPERFAMILY DNA-binding domain 77 137 IPR016177 GO:0003677
Cmo19g00097 215 SMART rav1_2 77 141 IPR001471 GO:0003700|GO:0006355
Cmo19g00097 215 Gene3D AP2/ERF domain 76 137 IPR036955 GO:0003700|GO:0006355
Cmo19g00097 215 PANTHER DNA-BINDING DOMAIN 49 204 IPR044808 GO:0003700|GO:0009873
Cmo19g00097 215 CDD AP2 76 136 IPR001471 GO:0003700|GO:0006355
Cmo19g00097 215 Pfam AP2 domain 77 127 IPR001471 GO:0003700|GO:0006355
Cmo19g00097 215 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 49 204 - -
Cmo19g00097 215 MobiDBLite consensus disorder prediction 1 23 - -
Cmo19g00097 215 ProSiteProfiles AP2/ERF domain profile. 77 135 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g00292 Cmo19g00097 CCT
Cmo02g01795 Cmo19g00097 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00292 Cmo-Chr8:1799748 Cmo19g00097 Cmo-Chr19:548824 3.42E-59 dispersed
Cmo19g00097 Cmo-Chr19:548824 Cmo03g01303 Cmo-Chr3:9811610 7.35E-31 dispersed
Cmo14g01846 Cmo-Chr14:13963597 Cmo19g00097 Cmo-Chr19:548824 2.61E-48 wgd
Cmo19g00097 Cmo-Chr19:548824 Cmo02g01795 Cmo-Chr2:10198332 5.01E-100 wgd
Cmo19g00097 Cmo-Chr19:548824 Cmo06g01334 Cmo-Chr6:9931260 2.17E-53 wgd
Cmo19g00097 Cmo-Chr19:548824 Cmo08g01062 Cmo-Chr8:6866695 1.35E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11585 PF00847 AP2 1.10E-14 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00097 K14516 - csv:101220325 243.817