Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00117 ATGAAGAGCGACGTTAAGATAAGAAGGGGGAGGAGCGCTGGAAGAGGGGGGAATATTAGGAAGATAATGAAGTGCTTGTGTTCTGGTGAGAAAGCAGCTGGGGATGATGGGATTCCTGCATCAGAATCGCCTTTGCCTGTGGAGAATTCAGCAAGCGGGCGCTCTTCACGGACTAGCGAGATCAACAAGAAGCCAGAAATTGGCAATATAGAAGAAGCTGAGTCCTCGCTTCGCGAGAGTGGTTCTTTGAATTATGAGGAAGCAAGAGCATTGCTGGGGAGATATGAATATCAAAAGGGAAATATTGAAGCTGCTCTTCATGTATTTGAAGGAATAGATATTGCTGCTATAACTAGTAAGATAATGATCTCCATAGGTAGAAGAGGAGACTGCCCGAGAAGACGATCGCAAAGTTTTACTACACCACCAATGTCGATGCATACTGTCAGTTTACTCTTGGAAGGCATCTTTTTCAAAGCAAAATCACTGCAAGCCCTTGGGAAGTTCGGAGAAGCTGCCCGAACTTGCAAAGTTATTCTGGACATACTCGAATCTTCGTTCCCCGAAGGCTTGCCTGAAAACTTTGGTGCTGATTGTAAATTGCAGGAGACCGTTACAAAGGCGGCGGAGCTGCTACCGGAGTTATGGAAGCTAGCTGATGCTTCTCAAGAAGCGATCCTTTCATACCGGCGGGCACTTCTTCATCTGTGGAACCTTGATGCGGGAACCACTGCTCGAATTCAGAAAGAGTTTGCCATTTTTCTTCTGTACAGTGGAACCGAAGCATGCCCTCCTAATCTTCGGTCGCAAATGGACAGCTCGTTTGTACCGAAAAACAATATTGAAGAAGCTATACTCTTATTTATGATACTTCTTAGGAAAGTTATTCTTAAAAGGATTGATTGGGATCCATCAATCTTGGATCACCTCTCCTTTGCACTAACAATATCAGGGGATACAAGGGCTTTAGCAGGTCAAATAGAGGAATTGCCTCCTGGGATTCTACAACGACAAGAAAGGTACCATGCTCTAGCTCTTTGTTACTATGGAGCAGGTGAAGACTTGGCTGCTTTGAATCTGTTGAGGAAAGTGTTGAGCAGTCATGAGGATCCTAAATCACTTCCCCCTTTACTGATGGCGTCAAAGATTTGTGGAGAAAACTGCGAGCTTGCCGAAGAGGGAACGAGTTTCGCTTATAGAGCTCTGCAAAGCCTGGATCATGGATGTGATCAATTGGAAGGTGTTGCCAATTGTTTGTTGGGTATCTCACTGTCTGTGTATTCGAAATCCGCCGTTGCAGATTCCGAGAAGTCCTCCAGACAATGTGAGGCAATGGAAGCCCTCGAAGCTGCACGGAAGAAGACTAGAATGACCGACCCGAATGTTCTCTATCATTTGAGTCTTCAATATGCAGATGAGAGGAATTTAGATTCAGCACTTCATTATGCAAGGAAGTGTCTCAAGCTGGAAGGTGGATCTAATATCAAAACTTGGTTACTACTGGCTCGGATTCTCTCCGCCCAACAACGATATACTGATAGCGAAAGTATTATAAATGCAGCTCTGGATCAAACAGGGAAATGGGATCAAGGCGAGTTGCTTCGAACAAAAGCAAAGCTTCTAATTGCACAGGATGAGTTTAAAGGTGCTATCGAGACTTACAGTCGATTACTCGCTATTTTTCAAATTCGGAGTAAAAATTTCGGTTCGGGAGATAAGAAGCTACGGAGCAGTACTAGAAGATTGAAAATGGAAGTGTGGCATGATCTAGCTCTAGTCTACATAAGGCTCTTGCAGTGGCACGATGCCGAGGCCTGCCTTTCGAAGTCGAAGGCCATCTGTTCTCATTCGGCTTCTAGATGTCATATTACAGGTATGCTTTATGAAGCAAAAGGCTTGTATAAAGAAGCTCTGAAAGCTTTTATGGCTGCTCTGGACATTGATCCCATTCATGTCCCGAGCTTGGTTTCGTCTGCCGTGGCTATCAGACATCTCGGCCACCGATCACATCCCGTTGTACGCAGCTTTTTGATGGATGCTCTACGGCTCGACCAGACGAACCATGGTGCGTGGTACAATCTCGGGCTGTTCTACAAATCTGAAGGAACCAAGTCTTCATTGGTTGAAGCTGTTGAATGTTTTGAGGCTGCAGCTTTTCTTGAAGAGTCTGCTCCTGTTGAACCCTTTAGATAA 2193 45.05 MKSDVKIRRGRSAGRGGNIRKIMKCLCSGEKAAGDDGIPASESPLPVENSASGRSSRTSEINKKPEIGNIEEAESSLRESGSLNYEEARALLGRYEYQKGNIEAALHVFEGIDIAAITSKIMISIGRRGDCPRRRSQSFTTPPMSMHTVSLLLEGIFFKAKSLQALGKFGEAARTCKVILDILESSFPEGLPENFGADCKLQETVTKAAELLPELWKLADASQEAILSYRRALLHLWNLDAGTTARIQKEFAIFLLYSGTEACPPNLRSQMDSSFVPKNNIEEAILLFMILLRKVILKRIDWDPSILDHLSFALTISGDTRALAGQIEELPPGILQRQERYHALALCYYGAGEDLAALNLLRKVLSSHEDPKSLPPLLMASKICGENCELAEEGTSFAYRALQSLDHGCDQLEGVANCLLGISLSVYSKSAVADSEKSSRQCEAMEALEAARKKTRMTDPNVLYHLSLQYADERNLDSALHYARKCLKLEGGSNIKTWLLLARILSAQQRYTDSESIINAALDQTGKWDQGELLRTKAKLLIAQDEFKGAIETYSRLLAIFQIRSKNFGSGDKKLRSSTRRLKMEVWHDLALVYIRLLQWHDAEACLSKSKAICSHSASRCHITGMLYEAKGLYKEALKAFMAALDIDPIHVPSLVSSAVAIRHLGHRSHPVVRSFLMDALRLDQTNHGAWYNLGLFYKSEGTKSSLVEAVECFEAAAFLEESAPVEPFR 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 686724 690768 + CmoCh19G001170.1 Cmo19g00117 403277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00117 730 PANTHER PROTEIN NPG1 13 730 IPR043376 -
Cmo19g00117 730 PANTHER PROTEIN NPGR2 13 730 - -
Cmo19g00117 730 Pfam Tetratricopeptide repeat 624 650 IPR019734 GO:0005515
Cmo19g00117 730 MobiDBLite consensus disorder prediction 59 73 - -
Cmo19g00117 730 Gene3D Tetratricopeptide repeat domain 147 566 IPR011990 GO:0005515
Cmo19g00117 730 MobiDBLite consensus disorder prediction 33 75 - -
Cmo19g00117 730 ProSiteProfiles TPR repeat profile. 618 651 IPR019734 GO:0005515
Cmo19g00117 730 SMART tpr_5 584 617 IPR019734 GO:0005515
Cmo19g00117 730 SMART tpr_5 153 186 IPR019734 GO:0005515
Cmo19g00117 730 SMART tpr_5 460 493 IPR019734 GO:0005515
Cmo19g00117 730 SMART tpr_5 495 528 IPR019734 GO:0005515
Cmo19g00117 730 SMART tpr_5 531 564 IPR019734 GO:0005515
Cmo19g00117 730 SMART tpr_5 338 371 IPR019734 GO:0005515
Cmo19g00117 730 SMART tpr_5 688 724 IPR019734 GO:0005515
Cmo19g00117 730 SMART tpr_5 618 651 IPR019734 GO:0005515
Cmo19g00117 730 Gene3D Tetratricopeptide repeat domain 572 724 IPR011990 GO:0005515
Cmo19g00117 730 SUPERFAMILY TPR-like 531 702 IPR011990 GO:0005515
Cmo19g00117 730 SUPERFAMILY TPR-like 339 560 IPR011990 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01776 Cmo19g00117 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01381 Cmo-Chr1:10874312 Cmo19g00117 Cmo-Chr19:686724 0 dispersed
Cmo05g00140 Cmo-Chr5:609364 Cmo19g00117 Cmo-Chr19:686724 0 dispersed
Cmo09g00716 Cmo-Chr9:3547046 Cmo19g00117 Cmo-Chr19:686724 0 dispersed
Cmo14g01869 Cmo-Chr14:14051061 Cmo19g00117 Cmo-Chr19:686724 0 wgd
Cmo19g00117 Cmo-Chr19:686724 Cmo02g01776 Cmo-Chr2:10125829 0 wgd
Cmo19g00117 Cmo-Chr19:686724 Cmo06g01314 Cmo-Chr6:9826153 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00117 K21843 - csv:101223229 1244.18