Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00123 ATGGAACGAGAGCTGGTATCGAGACGTTTTGTTCATTCCAGTCATTTACACTCTAGCAGTGGAGTGGTTGGCCACATATTTTCGTCGTCTCCCGGGTTTTCAACAGATCTCCATTATTCATCGGTTTCGTTTTACGAACACCAATCTGATGCGCCTTTCGTTCCCGAGCCATCAGCTAATGGTGTACTGTTGAATTCTCATTCAGAACTTCTTTCATCAAAAAACCATCCTACTGGTGAAAATGGCAATTCCTGGCGTTCGGATGCATTGCCGGGTTTTCGAGAAGCTCCTGAAAGTAACCCGGTTGGCGGTAGTCGTGTAGAGAACAATAGCTGCAGCTCTCTTATGGTATCAGAGGATTTTAGTAAAGAAAATGATTGTCAGGAATGGACGGATAGGCTAATAACTGATGATCCTTTGAGTTCTAATTGGAGTGACCTTCTAGTGGATGCTGATGTTGTAGATTTGGAACCGAAGATGGTGCACCAAGCACCTAACCCAGCAATACAAATGCACGTGCAGCAATCTCGAGTTCAAAATCGACTTCCTTCTTCAAATGGAGCTCCCTCGAAGCTGCGAATGCGATGGACACCCGAACTTCATGATGCATTTGTAGAGGCTGTAAACAAACTTGGTGGTAGTGAAAGAGCTACTCCCAAGGGTGTTCTTAAGCTTATGCAAGTGGAGGGTTTGACAATCTATCATGTAAAAAGCCACTTGCAGAAATATAGAACGGCTAGATACCAACCAGAATCATCAAAAGGACCAATGGAGAAAAGCACCACCTCACTTGACGATATTTCATCTCTCGATCTGAAAACGAGTATTGACATCACAGAGGCTCTACGGCTGCAGATGGAAGTTCAAAAAAAGTTACATGAACAACTCGAGATCCAACGAAATTTACAATTAAGAATAGAAGAACAGGGGAAGTACCTTCAAATGATGTTTGAAGAACAATGCAAGTCAAGCAATAACCTGACAAAGCCATCAGATAATCCCACACGATTCACCGATCCATCCGAAGCTGACTCGATATCCGAAAAGACTACTAACCAAGTAGAGGGGAAGCTATTAGCTTCTCATAGGGAAGTCCCGGAGAATCCCGAGCCTGATGTTTTTGAATCTCGCTCCGAACTATCGAAACGCCAAAGGACAGATGAGTAG 1167 43.79 MERELVSRRFVHSSHLHSSSGVVGHIFSSSPGFSTDLHYSSVSFYEHQSDAPFVPEPSANGVLLNSHSELLSSKNHPTGENGNSWRSDALPGFREAPESNPVGGSRVENNSCSSLMVSEDFSKENDCQEWTDRLITDDPLSSNWSDLLVDADVVDLEPKMVHQAPNPAIQMHVQQSRVQNRLPSSNGAPSKLRMRWTPELHDAFVEAVNKLGGSERATPKGVLKLMQVEGLTIYHVKSHLQKYRTARYQPESSKGPMEKSTTSLDDISSLDLKTSIDITEALRLQMEVQKKLHEQLEIQRNLQLRIEEQGKYLQMMFEEQCKSSNNLTKPSDNPTRFTDPSEADSISEKTTNQVEGKLLASHREVPENPEPDVFESRSELSKRQRTDE 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 723628 727308 - CmoCh19G001230.1 Cmo19g00123 403283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00123 388 SUPERFAMILY Homeodomain-like 189 245 IPR009057 -
Cmo19g00123 388 MobiDBLite consensus disorder prediction 73 109 - -
Cmo19g00123 388 MobiDBLite consensus disorder prediction 360 388 - -
Cmo19g00123 388 MobiDBLite consensus disorder prediction 324 357 - -
Cmo19g00123 388 Gene3D - 190 249 - -
Cmo19g00123 388 Pfam Myb-like DNA-binding domain 193 244 IPR001005 -
Cmo19g00123 388 PANTHER PROTEIN PHR1-LIKE 1-LIKE ISOFORM X1 3 355 - -
Cmo19g00123 388 MobiDBLite consensus disorder prediction 324 388 - -
Cmo19g00123 388 Pfam MYB-CC type transfactor, LHEQLE motif 277 323 IPR025756 -
Cmo19g00123 388 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 3 355 IPR044848 GO:0003700
Cmo19g00123 388 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 191 245 IPR006447 GO:0003677
Cmo19g00123 388 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 188 248 IPR017930 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01770 Cmo19g00123 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g01291 Cmo-Chr7:7134301 Cmo19g00123 Cmo-Chr19:723628 1.21E-51 dispersed
Cmo10g01079 Cmo-Chr10:5854637 Cmo19g00123 Cmo-Chr19:723628 1.36E-84 dispersed
Cmo11g00986 Cmo-Chr11:5250875 Cmo19g00123 Cmo-Chr19:723628 3.35E-90 dispersed
Cmo19g00123 Cmo-Chr19:723628 Cmo14g00469 Cmo-Chr14:2300274 1.28E-45 dispersed
Cmo19g00123 Cmo-Chr19:723628 Cmo02g01770 Cmo-Chr2:10102355 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11589 PF00249 Myb_DNA-binding 3.40E-09 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00123 - - cpep:111776325 713.375