Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00155 ATGGCGGTCACTCTTAGACTACAGTTTTCAACCGCTTCATTAATGCTCTTCCTTCTTCTCAACATCCTCTTCGTTCAATCCAGTTTTGCTGGAGATCAGCGATTGCAGAGCTTTAATTCTTCATCCATGGCGGACCGTGTTGATAGTTTTTCTGGAGATGAGCGACTGCAGAGCTTCAATTCTTCATCCATGGCGGACCGCTTTGCTGGAGATCAGCGATTGCAGAGCTTCAATTCTTCATCCATGGCGGACCGGTATGTTAAGAATGAGCATGCCGTTGATAATCCAGAGGAAATTGCATCAATGGTGGATTTGAGCATACGCAACAGCACAGAGAGAAGGAACTTGGGGTTCTTCTCTTGTGGAACAGGAAATCCAATTGATGATTGTTGGCGTTGTGACCCACGTTGGCAACTGCGGCGAAAGCGCCTCGCCAATTGCGGCATTGGGTTTGGTCGTAATGCAGTCGGTGGCCGTGATGGGCGATACTACGTCGTTTCTGATCCACGTGACGACGATCCTGTCAATCCCAGACCAGGCACCCTCCGCCATGCTGTGATTCAAGACAGACCATTATGGATTGTGTTCAAACGAGACATGGTGATCACTTTAAAGCAAGAACTCATCATGAACAGCTTCAAGACAATTGATGGGCGTGGCGTCAATGTCCACATCGCTTATGGTGCTTGTATTACAATCCAATTCATTACCAATGTTATTATTCATGGTTTGCATATTCATGACTGCAAGCCAACGGGGAATGCCATGGTTCGAAGCTCGCCTAGTCATTATGGATGGAGGACAATGGCTGATGGTGATGGGATTTCAATTTTTGGGTCGAGTCATATTTGGATTGACCATAATTCTCTTTCTTCTTGTTCTGATGGGCTCATTGATGCTATCATGGGATCAACTGCTATCACAATTTCTAACAATTACTTCACCCACCACAATGAGGTGATGCTCTTGGGACATAGTGACTCTTATATGATTTTGTGTAGACATGGGTATTTCCATGTAGTAAACAATGACTACACTCACTGGGTAATGTATGCCATTGGTGGAAGTGCTAATCCCACCATTAATAGCCAGGGCAACCGATATCTTGCCCCTGTCAACCCTTTTGCCAAAGAGGTCACAAAGAGAGTTGTCACATCTAACGGTGTATGGAGGCACTGGAATTGGAGATCGGAGGGAGATCTCATGCTAAATGGAGCCTATTTCACTCCATCAGGGGCTGGTGCAGGAGCCAGTTATGCAAGAGCCTCAAGCTTAGGAGCCAAATCCTCTTCGTTGGTGGGCTCGCTTACTTCAAATGCAGTCCTTGAAATGGCTAATAAGCTTAATTTGATGTTGATTATGGCTATGGCTATGGCTGCATTTGCACTCCATGTTGCTGCAAGAACTGCCCCAATTGAGGCTGCAAAAGGCCTCAATGACCAAAAGAACTTCCTCGGCGGTGGCTTCTCTGGCATTGGTGATAGCGGACTCCCCTTTGGAGGACTCGGAGGAGGCGGTGGCTTGGGCGGGATCGGCGGTGGCCTTGGCGGGTTCGGTGGGGTTGGCATCGGTGGCATCGGTGCCGGAGTTGGCGGGGTTGGTGGTGGATTTGTTAAGATTCCTTGA 1626 47.85 MAVTLRLQFSTASLMLFLLLNILFVQSSFAGDQRLQSFNSSSMADRVDSFSGDERLQSFNSSSMADRFAGDQRLQSFNSSSMADRYVKNEHAVDNPEEIASMVDLSIRNSTERRNLGFFSCGTGNPIDDCWRCDPRWQLRRKRLANCGIGFGRNAVGGRDGRYYVVSDPRDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIAYGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSSCSDGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYMILCRHGYFHVVNNDYTHWVMYAIGGSANPTINSQGNRYLAPVNPFAKEVTKRVVTSNGVWRHWNWRSEGDLMLNGAYFTPSGAGAGASYARASSLGAKSSSLVGSLTSNAVLEMANKLNLMLIMAMAMAAFALHVAARTAPIEAAKGLNDQKNFLGGGFSGIGDSGLPFGGLGGGGGLGGIGGGLGGFGGVGIGGIGAGVGGVGGGFVKIP 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 944910 952505 - CmoCh19G001550.1 Cmo19g00155 403315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00155 541 PANTHER PECTATE LYASE 18-RELATED 331 441 IPR045032 GO:0030570
Cmo19g00155 541 Pfam Pectate lyase 208 328 IPR002022 -
Cmo19g00155 541 PRINTS Pollen allergen Amb family signature 171 196 IPR018082 -
Cmo19g00155 541 PRINTS Pollen allergen Amb family signature 147 164 IPR018082 -
Cmo19g00155 541 PRINTS Pollen allergen Amb family signature 393 417 IPR018082 -
Cmo19g00155 541 PRINTS Pollen allergen Amb family signature 351 370 IPR018082 -
Cmo19g00155 541 PRINTS Pollen allergen Amb family signature 422 445 IPR018082 -
Cmo19g00155 541 Gene3D - 124 442 IPR012334 -
Cmo19g00155 541 PANTHER PECTATE LYASE 331 441 - -
Cmo19g00155 541 PANTHER PECTATE LYASE 83 330 - -
Cmo19g00155 541 SMART amb_all 199 374 IPR002022 -
Cmo19g00155 541 PANTHER PECTATE LYASE 18-RELATED 83 330 IPR045032 GO:0030570
Cmo19g00155 541 SUPERFAMILY Pectin lyase-like 102 420 IPR011050 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01742 Cmo19g00155 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g01006 Cmo-Chr8:6539045 Cmo19g00155 Cmo-Chr19:944910 0 dispersed
Cmo18g00180 Cmo-Chr18:1237313 Cmo19g00155 Cmo-Chr19:944910 0 dispersed
Cmo02g01745 Cmo-Chr2:9939808 Cmo19g00155 Cmo-Chr19:944910 6.60E-06 transposed
Cmo14g01918 Cmo-Chr14:14249841 Cmo19g00155 Cmo-Chr19:944910 0 wgd
Cmo17g00119 Cmo-Chr17:645851 Cmo19g00155 Cmo-Chr19:944910 0 wgd
Cmo19g00155 Cmo-Chr19:944910 Cmo02g01742 Cmo-Chr2:9932597 0 wgd
Cmo19g00155 Cmo-Chr19:944910 Cmo06g01274 Cmo-Chr6:9615807 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00155 K01728 - csv:101207204 705.671