Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00182 ATGTTGTGCTTGGTATATGATGTGACAAAATTCCTCGAAGACCATCCTGGTGGTGATGAAGTCTTGTTGTCAAGCACTGGTAAGGATGCAACCAATGATTTTCTCGACATCGGGCACAGCAGCGCTGCTAGTGCAATGATGGAAGAATTTTACGTAGGCGATATCGATAGCTCGGTTATTCCTGCAAAAGGAGAGTACATTCCTCCAAAGCAGCCCCTATACAACCAAGACAAGACACTGGAATTCATTATCAAGGTACTCCAGTTTCTAGCTCCCCTGGTAATTCTGGGTTTGGCTTTTGGCATCCACATCTATACCAAAACGACTTAA 330 44.24 MLCLVYDVTKFLEDHPGGDEVLLSSTGKDATNDFLDIGHSSAASAMMEEFYVGDIDSSVIPAKGEYIPPKQPLYNQDKTLEFIIKVLQFLAPLVILGLAFGIHIYTKTT 109
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1180756 1181229 - CmoCh19G001820.1 Cmo19g00182 403342

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00182 109 Pfam Cytochrome b5-like Heme/Steroid binding domain 5 55 IPR001199 -
Cmo19g00182 109 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 1 56 IPR001199 -
Cmo19g00182 109 Gene3D - 3 58 IPR036400 -
Cmo19g00182 109 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 11 18 IPR018506 GO:0020037
Cmo19g00182 109 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 5 60 IPR036400 -
Cmo19g00182 109 SMART Cyt_b5_2 1 56 IPR001199 -
Cmo19g00182 109 PRINTS Cytochrome B5 signature 15 29 IPR001199 -
Cmo19g00182 109 PRINTS Cytochrome B5 signature 30 37 IPR001199 -
Cmo19g00182 109 PRINTS Cytochrome B5 signature 43 55 IPR001199 -
Cmo19g00182 109 PRINTS Cytochrome B5 signature 5 15 IPR001199 -
Cmo19g00182 109 PANTHER - 5 107 - -
Cmo19g00182 109 PANTHER CYTOCHROME B5 5 107 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00182 K23490 CYB5; cytochrome b5 - csv:101212882 190.274
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00182 Cmo-Chr19:1180756 Cmo05g00477 Cmo-Chr5:2225434 2.78E-19 dispersed
Cmo14g01941 Cmo-Chr14:14367871 Cmo19g00182 Cmo-Chr19:1180756 7.62E-52 wgd
Cmo17g00112 Cmo-Chr17:595825 Cmo19g00182 Cmo-Chr19:1180756 1.96E-47 wgd
Cmo19g00182 Cmo-Chr19:1180756 Cmo02g01726 Cmo-Chr2:9856432 1.56E-64 wgd
Cmo19g00182 Cmo-Chr19:1180756 Cmo06g01256 Cmo-Chr6:9487661 2.00E-50 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g751 . . . . . . . . . . . Cma19g00162 . . . . Cpe15g00137 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed04g2056 . Cmo19g00182 . . . . . . Bhi12g01507 Tan06g2314 Cmetu05g1957 . . . Lcy13g0455 . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo02g01170 CST 1 134 NADPH P450 reductases AT5G53560 76.9 8.4e-58 220.3
Cmo15g01073 CST 1 134 NADPH P450 reductases AT5G53560 76.1 1.2e-56 216.5
Cmo14g01941 . 1 133 NADPH P450 reductases AT5G53560 69.9 4.8e-53 204.5
Cmo06g01256 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.5e-51 199.5
Cmo17g00112 . 43 175 NADPH P450 reductases AT5G53560 63.9 3.9e-47 184.9
Cmo02g01726 . 80 205 NADPH P450 reductases AT5G53560 65.1 2.4e-44 175.6
Cmo14g01941 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cmo06g01256 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cmo17g00112 . 43 175 NADPH P450 reductases AT5G48810 62.2 3.5e-46 181.8
Cmo02g01726 . 80 206 NADPH P450 reductases AT5G48810 61.2 4.2e-44 174.9
Cmo15g01073 CST 1 134 NADPH P450 reductases AT5G48810 57.4 2.1e-43 172.6
Cmo02g01170 CST 1 134 NADPH P450 reductases AT5G48810 57.4 6.1e-43 171.0
Cmo14g01941 . 22 133 NADPH P450 reductases AT2G32720 84.8 1.0e-50 196.8
Cmo06g01256 . 22 133 NADPH P450 reductases AT2G32720 83.0 5.0e-50 194.5
Cmo17g00112 . 64 175 NADPH P450 reductases AT2G32720 77.7 4.3e-46 181.4
Cmo02g01726 . 95 206 NADPH P450 reductases AT2G32720 69.6 3.2e-41 165.2
Cmo02g01170 CST 22 133 NADPH P450 reductases AT2G32720 66.1 1.0e-39 160.2
Cmo19g00182 . 5 108 NADPH P450 reductases AT2G32720 74.0 1.0e-39 160.2
Cmo15g01073 CST 22 133 NADPH P450 reductases AT2G32720 64.3 5.1e-39 157.9
Cmo05g00477 . 1 130 NADPH P450 reductases AT1G26340 57.5 6.1e-40 161.0
Cmo07g01169 CST 2 281 NADPH P450 reductases AT5G17770 81.1 6.3e-132 467.6
Cmo03g00203 CST 2 281 NADPH P450 reductases AT5G17770 80.7 5.4e-131 464.5
Cmo06g00047 . 2 316 NADPH P450 reductases AT5G17770 69.0 1.6e-119 426.4
Cmo20g00011 . 1 267 NADPH P450 reductases AT5G17770 64.9 3.5e-98 355.5
Cmo02g01170 CST 1 134 NADPH P450 reductases AT5G53560 76.9 8.4e-58 220.3
Cmo15g01073 CST 1 134 NADPH P450 reductases AT5G53560 76.1 1.2e-56 216.5
Cmo14g01941 . 1 133 NADPH P450 reductases AT5G53560 69.9 4.8e-53 204.5
Cmo06g01256 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.5e-51 199.5
Cmo17g00112 . 43 175 NADPH P450 reductases AT5G53560 63.9 3.9e-47 184.9
Cmo02g01726 . 80 205 NADPH P450 reductases AT5G53560 65.1 2.4e-44 175.6
Cmo14g01941 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cmo06g01256 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cmo17g00112 . 43 175 NADPH P450 reductases AT5G48810 62.2 3.5e-46 181.8
Cmo02g01726 . 80 206 NADPH P450 reductases AT5G48810 61.2 4.2e-44 174.9
Cmo15g01073 CST 1 134 NADPH P450 reductases AT5G48810 57.4 2.1e-43 172.6
Cmo02g01170 CST 1 134 NADPH P450 reductases AT5G48810 57.4 6.1e-43 171.0
Cmo14g01941 . 22 133 NADPH P450 reductases AT2G32720 84.8 1.0e-50 196.8
Cmo06g01256 . 22 133 NADPH P450 reductases AT2G32720 83.0 5.0e-50 194.5
Cmo17g00112 . 64 175 NADPH P450 reductases AT2G32720 77.7 4.3e-46 181.4
Cmo02g01726 . 95 206 NADPH P450 reductases AT2G32720 69.6 3.2e-41 165.2
Cmo02g01170 CST 22 133 NADPH P450 reductases AT2G32720 66.1 1.0e-39 160.2
Cmo19g00182 . 5 108 NADPH P450 reductases AT2G32720 74.0 1.0e-39 160.2
Cmo15g01073 CST 22 133 NADPH P450 reductases AT2G32720 64.3 5.1e-39 157.9
Cmo05g00477 . 1 130 NADPH P450 reductases AT1G26340 57.5 6.1e-40 161.0
Cmo07g01169 CST 2 281 NADPH P450 reductases AT5G17770 81.1 6.3e-132 467.6
Cmo03g00203 CST 2 281 NADPH P450 reductases AT5G17770 80.7 5.4e-131 464.5
Cmo06g00047 . 2 316 NADPH P450 reductases AT5G17770 69.0 1.6e-119 426.4
Cmo20g00011 . 1 267 NADPH P450 reductases AT5G17770 64.9 3.5e-98 355.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00182 Cmo_Chr19 FPKM 1.325315 1.733024 3.985537 4.548048 1.197117 0.640386 1.156417 3.45542 2.869128 3.417751