Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00193 ATGGGGCCGGGCGTGTTCTTGTCTGGCGCTGCAAGACAGGCCGAGATTCTCAGAAAAGATGGAAATCACTATTTCCAGAAGGGCCGGATTGGAGCCGCCATTGAAGCCTATACCGAGGTTTCTTCCTGTCTCTCGAATTGTTCTTTCTGGTCGCTATTTGGCTATCAAAATCGAATTATTTGGGATATTCTTGTTGTTTTTGATTTGAAGGCGATTACGCTATGTCCGAATGTTCCTGTGTATTTGACGAACCGTGCTTTGTGTCATCGCAAGCGGAATGATTGGAAGAAGGTGGAGGAGGACTGTCGGAGAGCTATTCAGCTTGACAACAATTCTGTCAAGGCACATTACATGGTAGGATTAGCATTAATACAAAACAAAGACTATCCTGAAGGAATCAAGCATTTGGAGAAGGCTTTGGATCTTGGTAGAGGTGCAAATCAAAAGAGTTATATGGTAGAGGAGATATGGCAGGAGCTTGCAAATGCAAAATACAGGGAGTGGGAACAAGCATCCACCAAACGTTCATGGGAATTGCAGACCTTGAAAGAGGCTTGTGAGGCTGCACTTGAACAAAAATACTTCCTTGACCAGTCTGAACCAGAAGGGTTCGTAGATCAAGCCGAAAGCGCTCATCGGGAACAATTAAACTCTCTAAGAAGTGTGTTTGAAAACTATGCCGTGGCTGATGCGCCATCTGAGGTCCCCGATCATCTTTGTTGTAAAATTACGCTCGATATTCTTCGTGATCCCGTTATTACTCCAAGCGGGGTTACATATGAGAGAGCAGTGATCCTCGACCATTTTCGAAAGGTTGGTAACTTCGATCCCATAACGCGGGAGCTACTCGACGAGTCTCAGCTAGTACCGAACTTAGCCATAAAGGAAGCTGTACAGGCATTTCTAGATAAGCATGGATGGGCTTACAATACAAATTAA 939 44.83 MGPGVFLSGAARQAEILRKDGNHYFQKGRIGAAIEAYTEVSSCLSNCSFWSLFGYQNRIIWDILVVFDLKAITLCPNVPVYLTNRALCHRKRNDWKKVEEDCRRAIQLDNNSVKAHYMVGLALIQNKDYPEGIKHLEKALDLGRGANQKSYMVEEIWQELANAKYREWEQASTKRSWELQTLKEACEAALEQKYFLDQSEPEGFVDQAESAHREQLNSLRSVFENYAVADAPSEVPDHLCCKITLDILRDPVITPSGVTYERAVILDHFRKVGNFDPITRELLDESQLVPNLAIKEAVQAFLDKHGWAYNTN 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1241081 1246865 + CmoCh19G001930.1 Cmo19g00193 403353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00193 312 SUPERFAMILY TPR-like 13 165 IPR011990 GO:0005515
Cmo19g00193 312 PANTHER OS08G0113300 PROTEIN 9 50 - -
Cmo19g00193 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 233 311 IPR013083 -
Cmo19g00193 312 Gene3D Tetratricopeptide repeat domain 10 175 IPR011990 GO:0005515
Cmo19g00193 312 ProSiteProfiles TPR repeat profile. 113 146 IPR019734 GO:0005515
Cmo19g00193 312 ProSiteProfiles U-box domain profile. 234 308 IPR003613 GO:0004842|GO:0016567
Cmo19g00193 312 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 70 311 IPR045200 GO:0000209|GO:0061630
Cmo19g00193 312 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 9 50 IPR045200 GO:0000209|GO:0061630
Cmo19g00193 312 CDD RING-Ubox_CHIP 235 301 IPR045202 -
Cmo19g00193 312 SUPERFAMILY RING/U-box 226 309 - -
Cmo19g00193 312 SMART Ubox_2 238 301 IPR003613 GO:0004842|GO:0016567
Cmo19g00193 312 Pfam Anaphase-promoting complex, cyclosome, subunit 3 81 139 - -
Cmo19g00193 312 PANTHER OS08G0113300 PROTEIN 70 311 - -
Cmo19g00193 312 Pfam U-box domain 235 307 IPR003613 GO:0004842|GO:0016567
Cmo19g00193 312 SMART tpr_5 113 146 IPR019734 GO:0005515
Cmo19g00193 312 SMART tpr_5 14 47 IPR019734 GO:0005515
Cmo19g00193 312 SMART tpr_5 79 112 IPR019734 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00193 Cmo-Chr19:1241081 Cmo18g00411 Cmo-Chr18:2697402 3.34E-09 dispersed
Cmo19g00193 Cmo-Chr19:1241081 Cmo02g01709 Cmo-Chr2:9800904 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00193 K09561 - csv:101215457 498.434