Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00194 ATGGCGAAAACGGGGGTGTTTGATTCTGATCCTACAGTCATGGGGAAAGCCACGGAGTTGAAGAGGGAGTTACAGAGACTTATTGATGCTATAATTGATGATGATAATTGCTCTACCGACACCATCGATCATGCTAAAGAGATTATTTCTGCCCTCAAGGAGTTGAAACTTAGGAAGAGATCACGCTCTTCTAATCGTTACGAGAATCTCATTTGCCCTGATGAATTTCGTTGTCCGCTTTCTAGGGAACTCATGAGAGATCCTGTCGTTGTGTCTACTGGCGAGACATATGACAGACCCTTCATTCATAAATGGTTAAGATCAGGAAACCGAACGTGTCCGAGAACTCAGCAAGTTCTTTCGCACACGAACCTCACTCCCAATCACTTGATTCGTGAAATGATATCTCAGTGGTGTACAAGTAGGGGAATTGAGTTGCAAGATCGTGTCCGTGTGCATTGTCTTGATGACGATGTGATAACCGAGGCTGATAGAGACCGTTTTCTCACGCTAATAGAGAATATGTCTATGACAATACCTGAACAGAAAGCAGCTGCTAAGGAGCTTCGTATGTTGACGAAGAGAATGCCCTCATTTCGAGCGCTTTTTGGCGAGTCCCTTGATGCCATCTCTTTGTTGCTTAGTCCACTTTGTGGAGATAAGTCACAAAGTAGTGTTCACGCGGATCTGCAAGAGGATGTGATCACAACCCTCTTGAATCTGTCGATCCATGACAACAACAAGAAGCTTGTAGCTGAAACTCCCAATGTAATACCGCTTCTAAAGGAAGCGTTGAGATCAGGAACCATGGAAACGAGGAGCAATGCAGCTGCAGCCCTATTTACTCTGTCAGCTCTCGATTCGAACAAAGCACTCATTGGAAAATCTGGTGCCTTGAAGCCCCTTATCGACCTTTTAGACGAGGGGCATCCTTTATCTATGAAGGATGCTGCTTCAGCCATATTTAATCTTTGTATACTTCATGAAAATAAAGCAAGAGCTGTGCGAGATGGTGCAGTTCGAGTGCTTCTGAAAAAGATTATGAACCAAATGCATGTTGATGAATTGTTGGCTATTCTTGCAATGCTTTCAAGCCATCAAAAGGCGGTCGAAGAAATCGGAGAGCTGGGAGCTGTCCCTTCCTTATTCAGAATTATCAGGGAAAGTTCTTGTTCTCGTAACAAGGAGAATTGCATTGTGATCATCCATGCTATCTGCTTATATGATCGAACCAAGTGGAAAGATATGAAGGAGGAGGAGAAATGGTATCGAACTATCTCTGAACTCGCTCAGAATGGGACTTCAAGGGCCAAGAGAAAGGCCAGTGGCATACTTGAAAGACTAAACAGGGCAGTTAATATGACCCATACCGCGTAA 1377 44.01 MAKTGVFDSDPTVMGKATELKRELQRLIDAIIDDDNCSTDTIDHAKEIISALKELKLRKRSRSSNRYENLICPDEFRCPLSRELMRDPVVVSTGETYDRPFIHKWLRSGNRTCPRTQQVLSHTNLTPNHLIREMISQWCTSRGIELQDRVRVHCLDDDVITEADRDRFLTLIENMSMTIPEQKAAAKELRMLTKRMPSFRALFGESLDAISLLLSPLCGDKSQSSVHADLQEDVITTLLNLSIHDNNKKLVAETPNVIPLLKEALRSGTMETRSNAAAALFTLSALDSNKALIGKSGALKPLIDLLDEGHPLSMKDAASAIFNLCILHENKARAVRDGAVRVLLKKIMNQMHVDELLAILAMLSSHQKAVEEIGELGAVPSLFRIIRESSCSRNKENCIVIIHAICLYDRTKWKDMKEEEKWYRTISELAQNGTSRAKRKASGILERLNRAVNMTHTA 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1250112 1252202 - CmoCh19G001940.1 Cmo19g00194 403354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00194 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 145 IPR013083 -
Cmo19g00194 458 PANTHER U BOX DOMAIN-CONTAINING 5 456 - -
Cmo19g00194 458 SMART Ubox_2 75 138 IPR003613 GO:0004842|GO:0016567
Cmo19g00194 458 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 5 456 - -
Cmo19g00194 458 SUPERFAMILY ARM repeat 181 448 IPR016024 -
Cmo19g00194 458 ProSiteProfiles U-box domain profile. 71 145 IPR003613 GO:0004842|GO:0016567
Cmo19g00194 458 SUPERFAMILY RING/U-box 69 148 - -
Cmo19g00194 458 Pfam U-box domain 73 142 IPR003613 GO:0004842|GO:0016567
Cmo19g00194 458 Gene3D - 208 351 IPR011989 -
Cmo19g00194 458 CDD RING-Ubox_PUB 76 118 IPR045210 -
Cmo19g00194 458 Pfam Armadillo/beta-catenin-like repeat 289 325 IPR000225 GO:0005515
Cmo19g00194 458 Gene3D - 352 456 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00992 Cmo-Chr12:9286759 Cmo19g00194 Cmo-Chr19:1250112 7.44E-119 dispersed
Cmo19g00194 Cmo-Chr19:1250112 Cmo13g00131 Cmo-Chr13:747202 1.58E-89 dispersed
Cmo19g00194 Cmo-Chr19:1250112 Cmo02g01708 Cmo-Chr2:9796300 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00194 - - csv:101215688 776.163