Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00208 ATGTCTCTCCTCAGTAGATTCTTTTACAGAAGGCCCCCGGATGGGTTGCTGGAATTTGTTGAACGAGTATATATTTTTGACTCGTGCTTTTCTACTGAAGTATTGCCTGATGATATGTACCAAATATATCTGCACGAAATCATAAACGAATTACATGAAGAATTCCCGGAGTCCTCTTTTCTTGCTTTTAATTTTCGTGAAGGGGAGAAACGGAGCCAATTTTCACAAATGTTGTGCGAGTATGATGTCACTGTGATGGATTATCCTCGACAATATGAAGGTTGCCCGCTTCTACCGCTGTCGTTAATACAGCACTTCCTCCATGTTTGTGAAAGTTGGCTTCTGCTAGCTCCCAAAGGGTTTTTGCAGCTCTTGTCACCATTAAATCCTTTCCCATCTCAGCTCCGCTACTTGCAATATGTTGCAAGGAGAAATATAGTCTCTGAGTGGCCACCACCTGAGCGAGCGCTTTCTTTAGATTGTGTAATTCTTCGTGGCATTCCGGGTTTTGATTCTCAGAATGGCTGCAGACCAGTTGTTCGTATTTTTGGGAGGAATCTTTTTAGTAAGGGTGGGCTTTCCACGCAGATGATTTTCTCTATGCCCAAGAAGAACAAGGCCCTCCGTCACTACCATCAGGCAGAGTGCGATGTGATTAAAATAGACGTTCAGTGTTTGGTTCAAGGAGATGTAGTGTTGGAGTGTTCACATTTGGAACCAGAACAAGAAAGGGAAGTTATGATGTTTCGTATTATGTTCAATACAGCGTTTATTCGATCAAACATACTGATGCTAACCTCTGAAAATTTGGACATTCTTTGGGATTCAAAGGAGCGTTATCCAAAAGGCTTTCGAGCTGAGGTTCTGTTTGGAGAGATGGAAAGCATCTCCCCTCCAAGGGCTCCAACCACAATTTTGAATGGTGAAGAGAAAGGTGGATTACCAATTGAAGCTTTTTCCAGGGTTCAAGAACTTTTTAGTGGTGTTGAGTGGATTGATAACAATGATGATGCTGCCTTGTGGCTACTCAAGAATCTTTCTGCCTTGAGTGATGTGAAGGAATTGTCAAGATTGCAAAATAAAACAAGTTCATACTCCTCACCAGTGGATTCTGAAGAGGAAAATAATACATCTAGCACTGCCGATAGTTTAGATGAAGTATTTGATACTATTACAAGGCCTGTGGTTGATTCAACTTCTACCAATTTTACAATTCCAGCTACGGTACATTCTTCTGAATTATTGTCCGACAAGATTGGTGCTAATGAAGTGAATATTTCATCAGAGTCTCCTCAACTTTTTGATGAATTTCAAGATGAGATATCTTCGAATAAAGAACCTCCATTAACTTCTTTTGGCTCCTCAATCCCTCCTATAAGTTCTTCTTTGATGTCATCGCCACTGTTGCCTCCATCTAATCTACCATCAACTAATGCTAGTGGGGAACTTGTCTCAAATAAAATGACACCCACTGTTGAAGTAATTCCTCCTCCACCACCACCGCCGCCGCCACCTTTTTCCCTGTCTCATAATGAACCTCATGTAGAAACTTCCATCAGTTCAAATTTGACTACCATAACAATGCATGGGAGACCCCCTCCACCACCTCCACCTCCACCTCCACCTCAATATACTACTGGTACCAATCCTGTTGAAGCCTCTTTGACTCATTCACTGTCGCTTGTTCCTAAAACTTCGGGTGCTCCTCCACCCCCACCTCCCCCTCCTCCTCCCCCTCCACAAGTTGTTGGTCCACCTCCACCTATTTCTAATTCCTCCAGTTCTCCACTTCCTCCTCCACCTCCGCCTCCAGTTCCAAAATCTTTTGGTACTCCTCCACCTCCACCTCCACCTCCGCCTCCGCTTCTAAAATCTTCTAGCGCTCCTCCACCTCCACCTCCACCTCCCCCTCCTCTTCTAAAATCTTCTAGTGCTCCTCCACCTTCACCTCCACCTCCACCTCCACCTCCGCCTCCGCTTCTAAAATCTTCTAGCGCTCCTCCACCTCCACCTCCACCTCCCCCTCCTCTTCTAAAATCTTCTAGTGCTCCTCCACCTTCACCTCCACCTCCACCTCCACCTCCGCCTCCGCTTCTAAAATCTTCTAGCGCTCCTCCACCTCCACCTCCACCTCCCCCTCCTCTTCTAAAATCTTCTAGTGCTCCTCCACCTTCACCTCCACCTCCACCTCCACCTCCGCCTCCGCTTCTAAAATCTTCTAGCGCTCCTCCACCTCCACCTCCACCTCCCCCTCCTCTTCTAAAATCTTCTAGTGCTCCTCCACCTTCACCTCCACCTCCACCTCCACCTCCGCCTCCGCTTCTAAAATCTTCTAGCGCTCCTCCACCTCCACCTCCACCTCCCCCTCCTCTTCTAAAATCTTCTAGTGCTCCTCCACCTTCACCTCCACCTCCACCTCCACCTCCGCCTCCGCTTCTAAAATCTTCTAGCGCTCCTCCACCTCCACCTCCACCTCCCCCTCCTCTTCTAAAATCTTCTAGTGCTCCTCCACCTTCACCTCCACCTCCACCTCCCCCTCCTCTTCTAAAATCTTCTAGTGCTCCTCCACCTTCACCTCCACCTCCACCTCCACCTCCGCCTCCAATTCCAAAACTTTCTGTTGCTCCTCCACCTCCACCTCCACCTCCAAAACTTTCTGGTGCTCCTCCACCTCCGCCTCCACCTCCAAAACTTTCTGGTGCTCCTCCGCCTCCGCCTCCGCCTCCAAAGTTTTCTGGTGCTCCTCCGCCTCCGCCTCCGCCTCCAAAACTTTCTGGTGCTCCTCCGCCTCCGCCTCCGCCTCCTAAACTTTCTGGTGCTCCTCCACCTCCACCTCCACCTCCACAATCAAATCGCGGTGCACCGGTTCCACCTCCTCCACCACCAAGACCTCCCAGTGTTGAGCTACCAAGTCATGGTACTAAACCAACTAGACCTCCTCCACCTCCTCCACCGGCAAAGTCCTCTAATGCTCACCCTCCGTCAAGTCATGGTGCTACACCAATGCCACCCCCTCCCCCCGGATCAAGAGGGCCAAATGTACCACCACCACCTCCTCCTTCTGTTGGAAGAGGCAAAGCTTCTCTAGGGTCAACAACTCAAGGAAGAGGCCGTCTTGCTACTGGAGTTGTAAATGCTCCAAAAAAAACCACTTTAAAACCATTGCACTGGGTAAAAGTTACTCGAGCAATGCAAGGCAGTTTGTGGGCTGATTCACAAAAGCAGGAAAATCAATCAAGGTGCACTATGAATGAATTTTTGAGTTCTCTGTTTTGTATTTTCTGGTTGCTTTTTCTGGCCCCAGAAATAGACATCTCTGAACTTGAAAGTCTATTCTCAGCAGCCTCTGCTTCTGATGGGAGTGGTAGTAAAGGTGGAGGACGACGTGGTTCCAATATCAACAAACCGGAAAAAGTGCAACTGATTGACCTGCGAAGAGCATATAACTGTGAAATAATGCTCTCAAAAATAAAGATTCCCTTACCGGATATGATAAATTCAGTTCTTGCATTGGATTCTTCTGCTCTTGATATTGACCAGGTTGAGAATCTCATCAAGTTTTGTCCTACCAGGGAAGAGATGGAAACGTTGAAGGTACTTCCGTCCCGGCTTCCTCTTTCACTGTACATATTGCTGCACATTGCCATTCCAAAACTTTGGGGGTTTCTCAATGTTGAATACAGTGAACCTTTGTCGTTATGA 3702 47.6 MSLLSRFFYRRPPDGLLEFVERVYIFDSCFSTEVLPDDMYQIYLHEIINELHEEFPESSFLAFNFREGEKRSQFSQMLCEYDVTVMDYPRQYEGCPLLPLSLIQHFLHVCESWLLLAPKGFLQLLSPLNPFPSQLRYLQYVARRNIVSEWPPPERALSLDCVILRGIPGFDSQNGCRPVVRIFGRNLFSKGGLSTQMIFSMPKKNKALRHYHQAECDVIKIDVQCLVQGDVVLECSHLEPEQEREVMMFRIMFNTAFIRSNILMLTSENLDILWDSKERYPKGFRAEVLFGEMESISPPRAPTTILNGEEKGGLPIEAFSRVQELFSGVEWIDNNDDAALWLLKNLSALSDVKELSRLQNKTSSYSSPVDSEEENNTSSTADSLDEVFDTITRPVVDSTSTNFTIPATVHSSELLSDKIGANEVNISSESPQLFDEFQDEISSNKEPPLTSFGSSIPPISSSLMSSPLLPPSNLPSTNASGELVSNKMTPTVEVIPPPPPPPPPPFSLSHNEPHVETSISSNLTTITMHGRPPPPPPPPPPPQYTTGTNPVEASLTHSLSLVPKTSGAPPPPPPPPPPPPQVVGPPPPISNSSSSPLPPPPPPPVPKSFGTPPPPPPPPPPLLKSSSAPPPPPPPPPPLLKSSSAPPPSPPPPPPPPPPLLKSSSAPPPPPPPPPPLLKSSSAPPPSPPPPPPPPPPLLKSSSAPPPPPPPPPPLLKSSSAPPPSPPPPPPPPPPLLKSSSAPPPPPPPPPPLLKSSSAPPPSPPPPPPPPPPLLKSSSAPPPPPPPPPPLLKSSSAPPPSPPPPPPPPPPLLKSSSAPPPPPPPPPPLLKSSSAPPPSPPPPPPPPLLKSSSAPPPSPPPPPPPPPPIPKLSVAPPPPPPPPKLSGAPPPPPPPPKLSGAPPPPPPPPKFSGAPPPPPPPPKLSGAPPPPPPPPKLSGAPPPPPPPPQSNRGAPVPPPPPPRPPSVELPSHGTKPTRPPPPPPPAKSSNAHPPSSHGATPMPPPPPGSRGPNVPPPPPPSVGRGKASLGSTTQGRGRLATGVVNAPKKTTLKPLHWVKVTRAMQGSLWADSQKQENQSRCTMNEFLSSLFCIFWLLFLAPEIDISELESLFSAASASDGSGSKGGGRRGSNINKPEKVQLIDLRRAYNCEIMLSKIKIPLPDMINSVLALDSSALDIDQVENLIKFCPTREEMETLKVLPSRLPLSLYILLHIAIPKLWGFLNVEYSEPLSL 1233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1367829 1379175 - CmoCh19G002080.1 Cmo19g00208 403368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00208 1233 PANTHER FORMIN-J 1 116 - -
Cmo19g00208 1233 PANTHER FORMIN-J 117 1198 - -
Cmo19g00208 1233 MobiDBLite consensus disorder prediction 997 1023 - -
Cmo19g00208 1233 MobiDBLite consensus disorder prediction 492 509 - -
Cmo19g00208 1233 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1055 1198 - -
Cmo19g00208 1233 MobiDBLite consensus disorder prediction 463 487 - -
Cmo19g00208 1233 MobiDBLite consensus disorder prediction 511 528 - -
Cmo19g00208 1233 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 154 293 IPR035892 -
Cmo19g00208 1233 MobiDBLite consensus disorder prediction 360 382 - -
Cmo19g00208 1233 Gene3D Protein tyrosine phosphatase superfamily 18 125 IPR029021 -
Cmo19g00208 1233 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1042 1233 IPR015425 -
Cmo19g00208 1233 Gene3D Formin, FH2 domain 1044 1206 IPR042201 -
Cmo19g00208 1233 SMART PTEN_C2_2 152 1114 IPR014020 -
Cmo19g00208 1233 MobiDBLite consensus disorder prediction 565 990 - -
Cmo19g00208 1233 PANTHER FORMIN-LIKE PROTEIN 12-RELATED 1 116 - -
Cmo19g00208 1233 MobiDBLite consensus disorder prediction 463 1047 - -
Cmo19g00208 1233 Gene3D - 151 296 - -
Cmo19g00208 1233 MobiDBLite consensus disorder prediction 529 546 - -
Cmo19g00208 1233 Pfam C2 domain of PTEN tumour-suppressor protein 153 291 IPR014020 -
Cmo19g00208 1233 MobiDBLite consensus disorder prediction 547 563 - -
Cmo19g00208 1233 Pfam Formin Homology 2 Domain 1047 1198 IPR015425 -
Cmo19g00208 1233 ProSiteProfiles C2 tensin-type domain profile. 154 293 IPR014020 -
Cmo19g00208 1233 PANTHER FORMIN-LIKE PROTEIN 12-RELATED 117 1198 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00208 Cmo-Chr19:1367829 Cmo01g01711 Cmo-Chr1:12844168 9.30E-51 dispersed
Cmo19g00208 Cmo-Chr19:1367829 Cmo02g01701 Cmo-Chr2:9740911 2.28E-91 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00208 - - cmos:111464075 1045.8