Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00217 ATGAAGGTTCTTGTGGTGGGTGGGAGTGGCTATTTGGGGAAGAGGATTGTAAAGGCCAGCCTTTTGGAAGGGCACCAGACGTATGTGGTTCAACGGCCTGAGATTGGTCTCGACATTGAGAAGCTTCAGCTGTTGCTTTCCTTTAAGAGACAGGGGGCGGTTCTTGTGCCGGCCTCTTTCTCGGACTTTCACAGCCTTGTCGACGCGGTGAAGCGAGTCGACGTCGTGATATCGGCCATGTCTGGCGTCCATTTTAGGTCACATAACCTTCTCCTCCAACTCAAGCTCGTTGAGGCCATTCAAGTTGCTGGCAATATCAAGAGATTCTTACCATCAGAGTACGGGATAGACCCAGCAAGAATGAAAGATGCACTCGAACCTGGAAGAGAAACATTTGATCAAAAAATGACGGTAAGAAAAGCAATAGAAGAAGCCAACATTCCTTTCACCTATGTCTCAGCCAACTGCTTTGCCGGTTACTTTGCCGGTAGCCTGTCTGAGATGCACACTCTTGTTCCTCCAACTCATCAAGTTACCCTTTATGGAGATGGCAACGTTAAAGCGGTATACGTGGACGAAGATGACATTGCAACGTACGTCGTGAAGGCAGCAACCGACCCTCGAACTATGAATAAAACAGTGTATATTAGACCTCCACACAACATTCTCTCCCAAAGAGAAATGGTTGAGAAATGGGAAGCACTTTCTGGAAAGGTATTAGAAAAGAAGAGTATTTCTGCTCAAGACTTTCTTGCAAGGATGAAAGATTTGGACTTGGGGCAGCGGGCTGGATTGGGACATTTTTATCACATATTCTTTGATGGTTGTATGACCAATTTTGAAGTACGAGAAGATGAAGAAGCTTCGAAGCTTTATCCCGAAGTGAACTATACTCGCATGGATGATTATCTCAAGATTTACTTATGA 927 45.42 MKVLVVGGSGYLGKRIVKASLLEGHQTYVVQRPEIGLDIEKLQLLLSFKRQGAVLVPASFSDFHSLVDAVKRVDVVISAMSGVHFRSHNLLLQLKLVEAIQVAGNIKRFLPSEYGIDPARMKDALEPGRETFDQKMTVRKAIEEANIPFTYVSANCFAGYFAGSLSEMHTLVPPTHQVTLYGDGNVKAVYVDEDDIATYVVKAATDPRTMNKTVYIRPPHNILSQREMVEKWEALSGKVLEKKSISAQDFLARMKDLDLGQRAGLGHFYHIFFDGCMTNFEVREDEEASKLYPEVNYTRMDDYLKIYL 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1448765 1451457 + CmoCh19G002170.1 Cmo19g00217 403377

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00217 308 Gene3D - 2 293 - -
Cmo19g00217 308 Pfam NmrA-like family 3 239 IPR008030 -
Cmo19g00217 308 CDD PCBER_SDR_a 2 303 IPR045312 GO:0016491
Cmo19g00217 308 Gene3D - 155 304 - -
Cmo19g00217 308 PANTHER PINORESINOL REDUCTASE-RELATED 2 305 - -
Cmo19g00217 308 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 2 257 IPR036291 -
Cmo19g00217 308 PANTHER BIFUNCTIONAL PINORESINOL-LARICIRESINOL REDUCTASE-LIKE 2 305 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00217 K21568 PLR; pinoresinol/lariciresinol reductase [EC:1.23.1.1 1.23.1.2 1.23.1.3 1.23.1.4] - csv:101218862 522.702
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00217 Cmo-Chr19:1448765 Cmo20g00855 Cmo-Chr20:4302016 2.67E-50 dispersed
Cmo19g00215 Cmo-Chr19:1440133 Cmo19g00217 Cmo-Chr19:1448765 2.60E-151 proximal
Cmo19g00217 Cmo-Chr19:1448765 Cmo19g00219 Cmo-Chr19:1457772 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g816 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo03g00896 . Bda07g00063 . . Bpe11g00301 . . . . Cmo19g00217 . . . . . Cpe15g00174 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002260 2 2 2 1 2 2 0 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 1 2 0 2 2 3 6 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00217 Cmo_Chr19 FPKM 2.656034 2.637008 1.837493 1.886737 1.616317 1.668237 2.22128 0.291564 0.150575 0.28802