Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00220 ATGGAGCGGAACTATCCGTATGAGAATGGAGTGATGATGACGAGAGACACGAAGCCAAGACTGAGATGGACTGCTGATCTTCACGACCGTTTTGTAGACGCGGTCACCAAACTCGGTGGCCCTGAAAAAGCAACTCCCAAGTCTGTGTTAAGATTGATGGGTTTAAAGGGCTTGACTTTGTACCACTTGAAGAGTCATTTACAGAAGTATAGACTTGGACTGCAAACTCGAAAGCAAAATGTGGCTGAGCAAAGGAATGAAAGTAGTGGGACTCTGAGCAACTTCATTGGAGTTGAGGAAGATGAGAGAGGGATGAAAATTGCTGAGGCACTAAAATCACATGTTGATGTGCAGAAAACAATACTAGAACAACTCGAGGTACAAAATAAACTACAAATGAGAATAGAAGCTCAAGGAAAATACTTGCAAGATATCTTAGAGAAAGCACAAAAGAGTCTGGCACTTGCCATTAACAGTGACCTTGGTAGTCTTGAAAGCACAGGAATGCAGTTATTAGGCTTTGACGTGGCTTTGTCAAATCAAATGGAAAAAAGTAAGAAACAAGAAATGAGAGGAAGCATGACGACTGTAAACGATACTTGTAAGAAGACGGGCGACTTACCCATCGAGATGTGCAAAGTGGAAGCTGGAGAAGAAGACACAAACGAGTTTAATGTTGAAAGGAATATGATCAACTTTGATTTGAATTCAAAAGGTGGCTATGATTACAGTTCGAATGGGGCTGAAGTACTTGAGGCCAATGTGCTTCCTTGTTCGAGGTAA 783 41.76 MERNYPYENGVMMTRDTKPRLRWTADLHDRFVDAVTKLGGPEKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGLQTRKQNVAEQRNESSGTLSNFIGVEEDERGMKIAEALKSHVDVQKTILEQLEVQNKLQMRIEAQGKYLQDILEKAQKSLALAINSDLGSLESTGMQLLGFDVALSNQMEKSKKQEMRGSMTTVNDTCKKTGDLPIEMCKVEAGEEDTNEFNVERNMINFDLNSKGGYDYSSNGAEVLEANVLPCSR 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1459343 1470768 - CmoCh19G002200.1 Cmo19g00220 403380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00220 260 Gene3D - 17 74 - -
Cmo19g00220 260 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 18 72 IPR006447 GO:0003677
Cmo19g00220 260 Pfam MYB-CC type transfactor, LHEQLE motif 105 152 IPR025756 -
Cmo19g00220 260 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 247 IPR044848 GO:0003700
Cmo19g00220 260 SUPERFAMILY Homeodomain-like 17 75 IPR009057 -
Cmo19g00220 260 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Cmo19g00220 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Cmo19g00220 260 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 247 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00220 Cmo-Chr19:1459343 Cmo06g01253 Cmo-Chr6:9468323 1.04E-51 dispersed
Cmo19g00220 Cmo-Chr19:1459343 Cmo02g01694 Cmo-Chr2:9712038 1.50E-151 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11598 PF00249 Myb_DNA-binding 2.70E-07 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00220 - - cmax:111466876 502.286