Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cmo19g00220	ATGGAGCGGAACTATCCGTATGAGAATGGAGTGATGATGACGAGAGACACGAAGCCAAGACTGAGATGGACTGCTGATCTTCACGACCGTTTTGTAGACGCGGTCACCAAACTCGGTGGCCCTGAAAAAGCAACTCCCAAGTCTGTGTTAAGATTGATGGGTTTAAAGGGCTTGACTTTGTACCACTTGAAGAGTCATTTACAGAAGTATAGACTTGGACTGCAAACTCGAAAGCAAAATGTGGCTGAGCAAAGGAATGAAAGTAGTGGGACTCTGAGCAACTTCATTGGAGTTGAGGAAGATGAGAGAGGGATGAAAATTGCTGAGGCACTAAAATCACATGTTGATGTGCAGAAAACAATACTAGAACAACTCGAGGTACAAAATAAACTACAAATGAGAATAGAAGCTCAAGGAAAATACTTGCAAGATATCTTAGAGAAAGCACAAAAGAGTCTGGCACTTGCCATTAACAGTGACCTTGGTAGTCTTGAAAGCACAGGAATGCAGTTATTAGGCTTTGACGTGGCTTTGTCAAATCAAATGGAAAAAAGTAAGAAACAAGAAATGAGAGGAAGCATGACGACTGTAAACGATACTTGTAAGAAGACGGGCGACTTACCCATCGAGATGTGCAAAGTGGAAGCTGGAGAAGAAGACACAAACGAGTTTAATGTTGAAAGGAATATGATCAACTTTGATTTGAATTCAAAAGGTGGCTATGATTACAGTTCGAATGGGGCTGAAGTACTTGAGGCCAATGTGCTTCCTTGTTCGAGGTAA	783	41.76	MERNYPYENGVMMTRDTKPRLRWTADLHDRFVDAVTKLGGPEKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGLQTRKQNVAEQRNESSGTLSNFIGVEEDERGMKIAEALKSHVDVQKTILEQLEVQNKLQMRIEAQGKYLQDILEKAQKSLALAINSDLGSLESTGMQLLGFDVALSNQMEKSKKQEMRGSMTTVNDTCKKTGDLPIEMCKVEAGEEDTNEFNVERNMINFDLNSKGGYDYSSNGAEVLEANVLPCSR	260

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
19	1459343	1470768	-	CmoCh19G002200.1	Cmo19g00220	403380

Annotation

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Cmo19g00220	260	Gene3D	-	17	74	-	-
Cmo19g00220	260	TIGRFAM	myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class	18	72	IPR006447	GO:0003677
Cmo19g00220	260	Pfam	MYB-CC type transfactor, LHEQLE motif	105	152	IPR025756	-
Cmo19g00220	260	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR PHL11	8	247	IPR044848	GO:0003700
Cmo19g00220	260	SUPERFAMILY	Homeodomain-like	17	75	IPR009057	-
Cmo19g00220	260	Pfam	Myb-like DNA-binding domain	21	71	IPR001005	-
Cmo19g00220	260	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	15	75	IPR017930	-
Cmo19g00220	260	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR PHL11	8	247	-	-

Pathway

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cmo19g00220	-	-	-	cmax:111466876	502.286

Dupl-types

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Cmo19g00220	Cmo-Chr19:1459343	Cmo06g01253	Cmo-Chr6:9468323	1.04E-51	dispersed
	Cmo19g00220	Cmo-Chr19:1459343	Cmo02g01694	Cmo-Chr2:9712038	1.50E-151	wgd

Syn-Families

Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
Cmo06g01253	CST	12	268	G2-like Transcription Factor Family	AT3G24120	62.2	1.8e-76	283.5
Cmo14g01946	CST	1	257	G2-like Transcription Factor Family	AT3G24120	61.3	8.9e-76	281.2
Cmo20g00312	.	22	194	G2-like Transcription Factor Family	AT3G24120	54.6	6.0e-40	162.2
Cmo19g01150	.	18	168	G2-like Transcription Factor Family	AT3G24120	58.3	7.9e-40	161.8
Cmo02g01694	.	4	151	G2-like Transcription Factor Family	AT3G24120	54.3	1.1e-38	157.9
Cmo19g00220	.	4	152	G2-like Transcription Factor Family	AT3G24120	52.5	1.3e-37	154.5
Cmo07g00367	.	31	149	G2-like Transcription Factor Family	AT3G24120	68.0	2.8e-37	153.3
Cmo19g00231	CCT,CST	152	354	G2-like Transcription Factor Family	AT5G16560	52.2	6.7e-42	169.1
Cmo09g00190	CCT	1	165	G2-like Transcription Factor Family	AT5G42630	56.9	1.3e-39	160.6
Cmo12g00449	CCT,CST	4	143	G2-like Transcription Factor Family	AT5G42630	58.3	9.4e-38	154.5
Cmo04g02159	.	20	256	G2-like Transcription Factor Family	AT1G25550	52.2	1.1e-48	191.0
Cmo03g01093	.	1	304	G2-like Transcription Factor Family	AT5G05090	54.3	5.7e-74	275.0
Cmo07g01147	.	1	299	G2-like Transcription Factor Family	AT5G05090	54.5	1.4e-72	270.4
Cmo14g00500	.	1	277	G2-like Transcription Factor Family	AT5G05090	58.6	1.7e-70	263.5
Cmo06g00028	.	1	285	G2-like Transcription Factor Family	AT5G05090	52.9	5.0e-70	261.9
Cmo06g01253	CST	12	316	G2-like Transcription Factor Family	AT4G13640	56.9	9.5e-62	234.6
Cmo14g01946	CST	1	293	G2-like Transcription Factor Family	AT4G13640	57.6	5.2e-60	228.8
Cmo02g01770	CST	87	356	G2-like Transcription Factor Family	AT3G04450	52.4	7.3e-57	218.8
Cmo06g01253	CST	12	268	G2-like Transcription Factor Family	AT3G24120	62.2	1.8e-76	283.5
Cmo14g01946	CST	1	257	G2-like Transcription Factor Family	AT3G24120	61.3	8.9e-76	281.2
Cmo20g00312	.	22	194	G2-like Transcription Factor Family	AT3G24120	54.6	6.0e-40	162.2
Cmo19g01150	.	18	168	G2-like Transcription Factor Family	AT3G24120	58.3	7.9e-40	161.8
Cmo02g01694	.	4	151	G2-like Transcription Factor Family	AT3G24120	54.3	1.1e-38	157.9
Cmo19g00220	.	4	152	G2-like Transcription Factor Family	AT3G24120	52.5	1.3e-37	154.5
Cmo07g00367	.	31	149	G2-like Transcription Factor Family	AT3G24120	68.0	2.8e-37	153.3
Cmo05g00868	.	7	200	G2-like Transcription Factor Family	AT1G69580	50.5	1.2e-36	151.4
Cmo19g01150	.	1	379	G2-like Transcription Factor Family	AT1G79430	53.6	3.0e-86	316.2
Cmo10g01273	.	1	376	G2-like Transcription Factor Family	AT1G79430	50.9	6.7e-78	288.5
Cmo20g00312	.	1	366	G2-like Transcription Factor Family	AT1G79430	53.0	1.5e-77	287.3
Cmo06g01253	CST	26	204	G2-like Transcription Factor Family	AT1G79430	55.7	2.1e-39	160.6
Cmo14g01946	CST	29	193	G2-like Transcription Factor Family	AT1G79430	59.4	7.5e-37	152.1
Cmo03g00639	.	84	327	G2-like Transcription Factor Family	AT2G01060	59.7	1.7e-53	206.8
Cmo07g00368	.	66	323	G2-like Transcription Factor Family	AT2G01060	56.9	1.9e-52	203.4
Cmo07g01147	.	1	299	G2-like Transcription Factor Family	AT3G10760	62.5	2.7e-89	326.2
Cmo03g01093	.	1	304	G2-like Transcription Factor Family	AT3G10760	60.2	7.4e-87	318.2
Cmo06g00028	.	1	285	G2-like Transcription Factor Family	AT3G10760	59.2	1.1e-85	314.3
Cmo14g00500	.	1	277	G2-like Transcription Factor Family	AT3G10760	58.6	1.5e-79	293.9
Cmo07g01147	.	1	204	G2-like Transcription Factor Family	AT2G40970	62.0	7.5e-60	228.0
Cmo14g00500	.	1	193	G2-like Transcription Factor Family	AT2G40970	59.4	1.4e-58	223.8
Cmo03g01093	.	1	204	G2-like Transcription Factor Family	AT2G40970	58.5	5.4e-58	221.9

Syn-Orthogroups

Select	Orthogroup	Bda	Bhi	Blo	Bma	Bpe	Cam	Car	Cco	Cec	Chy	Cla	Clacu	Cma	Cme	Cmetu	Cmo	Cmu	Cone	Cpe	Cre	Csa	HCH	Hepe	Lac	Lcy	Lsi	Mch	Sed	Tan	Vvi	Total
	OG0008955	1	3	1	1	0	1	2	1	1	1	1	1	2	1	1	2	1	1	2	1	1	1	1	1	1	0	1	1	1	1	34

Regulatory proteins

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	11598	PF00249	Myb_DNA-binding	2.70E-07	CL0123	Cmo	TF

Transcriptome

Select	Gene	Chr	Type	da1	da2	da3	da4	da5	da6	da7	da8	da9	da10
	Cmo19g00220	Cmo_Chr19	FPKM	1.411874	1.188167	0.0	0.0	4.265453	2.899312	3.273532	0.0	0.0	0.0