Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00221 ATGGCAATCGTAGCTGGCGGCCTCTCTTGCGCCTCAGATTCGCGCGATTTCTTACTTTCGACGTTTTGTTTTTTGCTTCTGGAGGATGCGCGATTCGATGGCAGCGAGAAGATCTGTGTGCTGAATACGTTTAGGACAATGGCACCACTGCTAAACGATCAGTTCAGTTTTCAAACGCCAGAAAGTCAGACTGTCCAGACTAAAAAAATCCCCAACAAGTATCCTGGCTGGTATTCACCAGATACAGGAATTTGTCGTAGTGTACATGCCTCTAGAGACTTGCCCACTGATCCATTTCTTGATGTTGCCTCTTATATCCTCTCCTTCCAACACAATGGTCGTTCAGCTCTCATTGATTCCTCCACTGGACATTCAATATCTTACAGGGAATTGTATCGTATGGTGAATTCCATGGCTTCTGGGCTCCAAAAATTGGGTGTTTCACAAGGGGATGTAGTCTTGCTTCTGTTACCAAATTCCATTTTCTATCCCATTGTTCTTCTGGGTGTGCTGTATTTGGGAGCTGTTATTACAACCATGTTTCCTCAAAGCAGTTCTCAAGAAATCAAGAAACGAATCAGTGAATGCAATGTGCGGCTGGCTTTTGCAACACCACAGAATGTTGGGAACTTTGAAGCATTTGGAGTTCAGGCAATTGGAGTACCAGAAAATACGAATTTGGACTTAATGAGGCCTATGGGATTTTCTTCTTTTTATGAGCTTATTTCAGGTGGTTTTGATTTGAATAAAAGACCTGTGATTAGACAGGAAGATACAGCTGCTATATTGTTTTCTTCTGGTACGACTGGAGTGAGCAAAGGGGTTCTGTTGACACATAGAAACTTTATATCTACGGTCGAGCTTTTTGTTCGGTTTGAAGCTTCGCAGTATGAGTATTTGACTACAGAGAATGTGTATTTGGCTGCTATACCAATGTTTCATGTGTATGGTCTCTCCATTTTTGTGATGGGATTATTGTCATTGGGTTCTAGTATTGTTGTAATGAGCAAATTCGATGTCAAAGAGGTGGTCGTGGCCATTGATAGATTTAAAGTTACACATTTTCCTGTTGTTCCGCCAATAATGATAGTTATGGCTAGGACTGCAGTGAAATTTGGTGGGCACAAATTTCGTAGTTTGAAACAGGTTTCTTGTGGGGCTGCTTCTTTGAGTAAGAAGATCATAGGGGATTTTGTGCAGGCTCTCCCTCATGTTGACTTCATTCAGGGATATGGCATGACTGAAACCACAGCCGTAGGCACCCGTGGCTTCAATACCAAAAAGGCTCAAAATTATTTGTCTGTTGGACTTTTAGCACCAAACATGGAAGCTAAAGTTGTTGATTGGGTTAGCGGATCTATCATGCCGCCTGGTAAAACCGGCGAACTTTTGTTACGCGGACCTGGTTTAATGAAAGGGTACTTGAATAATCCCGAGGCAACAATGTCCACAATAGACCAAGAAAATTGGCTACATACTGGAGACATCGTCTACTTTGACCGAGATGGATACTTGTATGTTGTTGATCGTTTGAAGGAGGTTATAAAGTATAAGGGCTTTCAGATCGCTCCTACTGATTTGGAATCAGTGGTGATCACACATCCAGAAGTTCTTGATACTGCAGTAGCTGCGGCCGAAGATGAAGAATGTGGGGAGATTCCAGTGGCATTTGTGGTGAAAAAGCCAGGAAGCTCACTCTCACAGAAAGATGTCATCGATTATGTTGCTCAACAGGTTGCGCCATATAAAAAGATCAGAAAAGTGGTGTTTACAGAATCAATACCCAAATCTGCTGCTGGCAAAGTACTGCGTAAGGAACTGGGGAAGCACTTGCCTTCTAAACTCTGA 1848 42.64 MAIVAGGLSCASDSRDFLLSTFCFLLLEDARFDGSEKICVLNTFRTMAPLLNDQFSFQTPESQTVQTKKIPNKYPGWYSPDTGICRSVHASRDLPTDPFLDVASYILSFQHNGRSALIDSSTGHSISYRELYRMVNSMASGLQKLGVSQGDVVLLLLPNSIFYPIVLLGVLYLGAVITTMFPQSSSQEIKKRISECNVRLAFATPQNVGNFEAFGVQAIGVPENTNLDLMRPMGFSSFYELISGGFDLNKRPVIRQEDTAAILFSSGTTGVSKGVLLTHRNFISTVELFVRFEASQYEYLTTENVYLAAIPMFHVYGLSIFVMGLLSLGSSIVVMSKFDVKEVVVAIDRFKVTHFPVVPPIMIVMARTAVKFGGHKFRSLKQVSCGAASLSKKIIGDFVQALPHVDFIQGYGMTETTAVGTRGFNTKKAQNYLSVGLLAPNMEAKVVDWVSGSIMPPGKTGELLLRGPGLMKGYLNNPEATMSTIDQENWLHTGDIVYFDRDGYLYVVDRLKEVIKYKGFQIAPTDLESVVITHPEVLDTAVAAAEDEECGEIPVAFVVKKPGSSLSQKDVIDYVAQQVAPYKKIRKVVFTESIPKSAAGKVLRKELGKHLPSKL 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1483825 1493237 + CmoCh19G002210.1 Cmo19g00221 403381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00221 615 Gene3D - 97 512 IPR042099 -
Cmo19g00221 615 Gene3D - 513 612 IPR045851 -
Cmo19g00221 615 Pfam AMP-binding enzyme C-terminal domain 527 601 IPR025110 -
Cmo19g00221 615 ProSitePatterns Putative AMP-binding domain signature. 262 273 IPR020845 -
Cmo19g00221 615 SUPERFAMILY Acetyl-CoA synthetase-like 110 610 - -
Cmo19g00221 615 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 69 613 - -
Cmo19g00221 615 PANTHER 4-COUMARATE--COA LIGASE-LIKE 6 69 613 - -
Cmo19g00221 615 CDD 4CL 94 607 - -
Cmo19g00221 615 Pfam AMP-binding enzyme 110 517 IPR000873 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01469 Cmo-Chr4:7516660 Cmo19g00221 Cmo-Chr19:1483825 1.66E-143 dispersed
Cmo14g00216 Cmo-Chr14:997716 Cmo19g00221 Cmo-Chr19:1483825 6.64E-137 dispersed
Cmo18g00200 Cmo-Chr18:1339080 Cmo19g00221 Cmo-Chr19:1483825 1.04E-134 dispersed
Cmo19g00221 Cmo-Chr19:1483825 Cmo11g00395 Cmo-Chr11:1967164 5.21E-110 dispersed
Cmo19g00221 Cmo-Chr19:1483825 Cmo09g00069 Cmo-Chr9:306661 1.65E-163 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00221 K01904 - csv:101219578 950.658