Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00226 ATGAGATTCACAGCCCCCAATTCTCTCCTCTCACTACTCAAACGAACAAGCTCTACCCTTTACTCAAATCCCATCAACACTTCAGAAACTATCAAATTCCGAGTTAAACAAAGCTTGTTTCCATCGGTTTCGACGTCTCTCGACGCGCACGAGAGACCGTTAGCCTTGTCCGTAGGCACCTATTATGATTCCGGAGTCTTTTCAGAGAATGTCCTTAACCACAGCCATCATTTATTGCCCTCTAAAGACATACAACAAAGTTTAGATTTGAGTTTGAAGCAGAAGGAGCAGGAATGTTTGTGCCTTCTAAAGAAATGCAAGAGCTTAGAAGAATTCAAACAAGTTCATGTTCAAATTCTGAAGTTAGGTCTTTTCTGGGATTCTTTCTGCTCAAGCAGTCTTTTGAGCACTTGTGCGCTCTCAGATTGGAGCAGCATGGACTATGCCTGCTCCATTTTCCAACAGCTAGATGAACCTACCACATTTCATTTCAACACAATGATCAAAGGCTATGTTAACAACATGAACTTTGAGAGTGCTCTAAATCTGTATGCCGATATGTTTCAAAGAGAAGTAGAACCCGACAACTTCACGTACCCGGTAGTTCTCAAGGCTTGTGCTCGGTTAGCAGCGATCGAGGAAGGGATGCAGATTCATGGTCATGTATTCAAGCTAGGTTTGGAAGATGATCTATTTGTACAGAATAGCTTAATCAATATGTATGGGAAATGTGGGGATATCGAACTGTCTTGTGCTGTTTTTCGACGTATGGAGGAAAAGAGTGTGGCTTCTTGGAGTGCTGTAATTTCAGCTCATGCTCGTGTTGGATTGTGGCGGGAATGTTTGATGTTGTTTGAGGATATGAGTAGAGAAGGATGTTGGAGGGCTGAGGAAAGTATATTAGTCAGTGTGGTCTCTGCTTGCACCCATTTGGGTGCTCTTCATTTAGGAAGATGTGCCCATGGTGCTCTATTGAGAAACATAACTGAACTAAATGTTGCGGTTAGGACTTCCTTAGTGGATATGTATGTGAAATGTGGGTCGCTTCAGAAAGGATTATGTCTCTTCCAGAACATGACCAAAAGGAATCAACTATCCTATAGTGTCATAATCTCAGGGCTTGGCTTACATGGACATGGTAGACAAGCTCTAAGAATCTTCTCAGAAATGGTTGAAGAAGGCTTAGAGCCTGATGATGTTATCTATGTTGGTGTGCTTAGCGCTTGTAGTCATTCCGGCCTTGTCGAAGAAGGTCTCGATATCTTCAATAGGATGAAGAACGAGTATGGGATTAAACCAACAATGCAGCATTATGGCTGCGTGGTAGACCTGATGGGACGAGCTGGTTTGCTTGAAGAAGCGTTTGAGCTTGTGAAAAGTATGCCTATAAAAGCGAACGATATAATTTGGCGGAGTATTCTAAGTGCTTGTAAGATTCATGACAACTTAAAGCTTGGTGAGGTAGCTGCAGAGAATCTATTTCGATCGTCTTCGCATAATCCTAGCGATTACCTAGTTTTGTCTAATATGTATGCAAGAGCTCAACAATGGGAGAATGTAGCTAAGATCAGGACAAAAATGTTCGAAGATGGCTTCGTCCAGACACCAGGGTATAGCTTGGTGGAGGTGAAAAGGAAGGTATACCAATTTGTTTCACAGGATAAATCGAACTGCAAATCGGGTAAAATCTACGAGATGATTCATCAGATGGAATGGCAATTGAGATTTGAAGGCTATATGGCAGATACATCACAGGTTATGCTTGATGTAGATGAAGAAGAAAAGAGAGAGAGATTGAAAGGTCATAGCCAGAAGTTGGCTATAGCTTTTGCGCTCATTCATACTTCACAGGGATCTGCAATAAGGATAACTAGAAACCTGAGAATGTGTACTGACTGTCATACATACACTAAACTGATTTCAATGATCTATGAACGAGAAATTACTGTAAGAGACCGGAATCGGTTCCACCGTTTTAAAGATGGAAACTGCTCGTGTAGGGATTACTGGTGA 2013 41.83 MRFTAPNSLLSLLKRTSSTLYSNPINTSETIKFRVKQSLFPSVSTSLDAHERPLALSVGTYYDSGVFSENVLNHSHHLLPSKDIQQSLDLSLKQKEQECLCLLKKCKSLEEFKQVHVQILKLGLFWDSFCSSSLLSTCALSDWSSMDYACSIFQQLDEPTTFHFNTMIKGYVNNMNFESALNLYADMFQREVEPDNFTYPVVLKACARLAAIEEGMQIHGHVFKLGLEDDLFVQNSLINMYGKCGDIELSCAVFRRMEEKSVASWSAVISAHARVGLWRECLMLFEDMSREGCWRAEESILVSVVSACTHLGALHLGRCAHGALLRNITELNVAVRTSLVDMYVKCGSLQKGLCLFQNMTKRNQLSYSVIISGLGLHGHGRQALRIFSEMVEEGLEPDDVIYVGVLSACSHSGLVEEGLDIFNRMKNEYGIKPTMQHYGCVVDLMGRAGLLEEAFELVKSMPIKANDIIWRSILSACKIHDNLKLGEVAAENLFRSSSHNPSDYLVLSNMYARAQQWENVAKIRTKMFEDGFVQTPGYSLVEVKRKVYQFVSQDKSNCKSGKIYEMIHQMEWQLRFEGYMADTSQVMLDVDEEEKRERLKGHSQKLAIAFALIHTSQGSAIRITRNLRMCTDCHTYTKLISMIYEREITVRDRNRFHRFKDGNCSCRDYW 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1524411 1526510 + CmoCh19G002260.1 Cmo19g00226 403386

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00226 670 Gene3D Tetratricopeptide repeat domain 321 577 IPR011990 GO:0005515
Cmo19g00226 670 Gene3D Tetratricopeptide repeat domain 97 205 IPR011990 GO:0005515
Cmo19g00226 670 Pfam PPR repeat 337 363 IPR002885 -
Cmo19g00226 670 Pfam PPR repeat 235 261 IPR002885 -
Cmo19g00226 670 Pfam PPR repeat 264 293 IPR002885 -
Cmo19g00226 670 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 85 656 - -
Cmo19g00226 670 Pfam E motif 480 542 IPR046848 -
Cmo19g00226 670 Gene3D Tetratricopeptide repeat domain 206 315 IPR011990 GO:0005515
Cmo19g00226 670 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 398 433 IPR002885 -
Cmo19g00226 670 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 160 194 IPR002885 -
Cmo19g00226 670 TIGRFAM PPR: pentatricopeptide repeat domain 264 293 IPR002885 -
Cmo19g00226 670 TIGRFAM PPR: pentatricopeptide repeat domain 366 398 IPR002885 -
Cmo19g00226 670 TIGRFAM PPR: pentatricopeptide repeat domain 164 195 IPR002885 -
Cmo19g00226 670 TIGRFAM PPR: pentatricopeptide repeat domain 233 261 IPR002885 -
Cmo19g00226 670 TIGRFAM PPR: pentatricopeptide repeat domain 400 434 IPR002885 -
Cmo19g00226 670 Pfam DYW family of nucleic acid deaminases 578 670 IPR032867 GO:0008270
Cmo19g00226 670 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 260 IPR002885 -
Cmo19g00226 670 Pfam PPR repeat family 159 208 IPR002885 -
Cmo19g00226 670 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 295 IPR002885 -
Cmo19g00226 670 PANTHER - 85 656 - -
Cmo19g00226 670 Pfam Pentatricopeptide repeat domain 385 446 IPR002885 -
Cmo19g00226 670 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00226 - - - csv:101215176 1033.86
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00226 Cmo-Chr19:1524411 Cmo17g01220 Cmo-Chr17:9726696 4.20E-156 dispersed
Cmo19g00226 Cmo-Chr19:1524411 Cmo10g00608 Cmo-Chr10:2749382 1.33E-65 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g750 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0499 . . . . . Chy04g00133 . . . . Bda09g00761 Bpe08g00802 . . . . . Cmo19g00226 . . . . . Cpe15g00184 Bhi05g00432 . . . Hepe06g1808 . Lcy12g1981 Cla09g01083 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000117 7 10 4 7 7 7 7 7 6 8 6 5 7 4 3 8 6 7 7 7 7 7 6 6 2 5 4 4 5 11 187
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00226 Cmo_Chr19 FPKM 17.107903 19.69908 14.631678 14.48865 11.46828 8.152458 11.92879 9.353179 9.943489 10.847518