Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00227 ATGGGTTACGAAGATGATCCGTACCGTGACGAGGATGGTGAACCATTGATGGACTTTGACCATATACAGTCAGACGGTGAGCAATCCCCTGAACCGTACAATCCCGACGAACTATTAGATGAGGATATTGGTGATTGGGGCGGGCGACAGCGATCTCAGACTCCTGTTTATGATGCGGAAGAGCCTCAGGCCAGGCCTAGAAAGAGGTTGATCAAAAAGAGTTTGGCTGGCAAGGAGACTGTGCCCTCCAATTTGGTGGACGATTATGATGATGCGAGGGACTTCTCGGCGGACCAGTTTGTGAGGGAGGGTTCGGAGGAGAGGAAAAGGAAGAGGGCGATTAGTAGTGGGAAAAAGGAGAAGAGATTCAAAGTAGATAATAAGTTTGGAAGTAGTAGTAGTGGAAGCAAGAGCAGATTATCAAAGAAAGCCTTCTCGGGTAAGGGGATGAAGGATCAAGATGGGGATGTCAAGGAGATGTGGGAGACTATTGCTGGTGGCGCTTCTGATGATGATCAAGAAGGTGCCAGAACAGTTGATGATGATAATTTTATAGACGATAGTGGTGTAGATCCTGCTGATCGGTATGGAAGTGATGATGAGCCACGCTCTCCCCGCTATGCTCCTGAGGCCGAGGAAGGTGAGGAAGATGACGAAATTAATGATCTCTTCAAGATGGGTAAGAAGAAGAAGAAGCATGAGAAAAGTCCTGCAGAAATAGCATTGCTAGTGGAGAATGTGATGGCCGAGCTTGAGGTCACTGCCGAAGAGGATGCGGACCTTAACAGGCAGGGGAAACCTGCTGTTAATAAACTGAAAAAGCTGCCACTTCTGACTGATGTTCTTTCGAAGAAGCAGCTTCAACAGGAATTCTTGGATCACGGAGTGCTAACCCTTCTAAAGAATTGGCTTGAACCTCTACCAGATGGGAGTTTGCCGAATATAAATATCCGGGAAGCAATCTTGAAGATTTTAACTGATTTTCCAATAGATCTTGAACAATATGATAGAAGAGAGCAGCTGAAGAAGAGTGGCCTTGGAAAGGTTATTATGTTTCTATCAAAATCTGATGAGGAAACCACATCCAACCGGAAACTTGCAAAAGATTTAGTAGATCAATGGAGTCGACCCATATTTAACAAAAGTACTAGATTTGAGGACATGAGAAATATGGAAGATGAAAGGGTGCCCTTTAGAAGACCAATGGGGAAAAAGTCGGGAAACAAAGCTGCTGGAATTGAATCTCGAGATGGGGATCTTGACTTGGATGAATTCTCACAGGGACGCAAGTCTAGTCAGTCATCCTCAAGGCAACATGCTTCACGGCCGGAAGCAACACCATTGGATTTTATTGTCCGTCCCCAATCTAAGATAGATCCAGATGAAATCAGAGCTCGTGCTAAGCAAGCCGTGCAAGATCAACGTCGCATGAAGATGAACAAAAAGTTGCAGCAGTTGAAGGCGCCAAAGAAGAAGCAGCTTCAAGCGACAAAACTCAGCGTTGAGGGTCGCGGCCAGAGTCAAAATCCCTCGTTATCTATTCGCCGTTTTCCTCCCATTCCCCGGGAGCCTATACAGCATATATTCCTTCTTCTTCCGCCGCCTGGTTGTTTAGGGCTTCGACGAATTCGGAGTTTTGCCGGCAGAGTAGACAGAGAATCTGGCAACCGAGATATAAAAGATCCTGAACACCCTTACTCTTTGGAAGAGCTTAAAGTGATAACAGAAGATGCAGTCGAAGTAGATGACGAGCATAGTTATGTGAGAGTTACATTTACTCCAACAGTTGAACATTGTAGCATGGCAACAGTTATTGGTTTGTGCTTAAGAGTGAAACTCATGAGGAACCTACCTTCTCGGTACAAGGTGGACATTAGGGTAGCTCCTGGATCTCATGCTACTGAAGCAGCAGAAGGTGATTTGAAGTCGAAGTGGATCGAGGAAGAGCAGAAATGGCCGTGTAAGGTTGCTTCAGCTCCAGGGAAAGTTTTAGTGACAGGAGGTTACCTTGTCTTGGAGAAACCGAATGCAGGGCTCGTACTTAGTACCAATGCTCGTTTTTATGCAATTGTAAAACCAATTTACGAGGAAATCAAGCCTGGCAGCTGGGCATGGTTGCACGTTGTTGATGATATTCAAGCAAGAAACCCTTTTGTAGAAAAAGCAGTGGAATATTGCGTAGCAGCTGCATGTGCAAAATTTGTTGACAATGACAATAAGAATGCATTACACAAACTGCTCTTGCAGGGTCTTGATATCACTATTTTAGGTTGCAATGAGTTCTACTCATATCGGAGTCAGATTGAGGCTCGTGGACTCCCGTTAACATCCGAATCCTTGGCTTCCTTGCCTCCTTTTTCATCAATTACCTTCAATGATGAGGAATCATATGGGGAAAATCGCAAGCCTGAAGTTGCAAAAACTGGATTGGGCTCATCTGCTGCCATGACAGCTGCTGTAGTTGCTGCTTTACTCAACTACCTTGGGGTTGTAAATCTTTCCTTACTGACAGGTGAGCAAGAACAGAAAGGTAGTGCTGATGTTGATTTGGTGCATATAATAGCTCAAAGTGCCCACTGCATTGCACAAGGAAAAGTTGGCAGTGGCTTTGATGTCAGTTCTGCAGTTTATGGCAGTCAACGCTATGTTCGGTTTTCACCAGAAGTGCTTTCTTCTGCTCAGGCTGCCAAGAACGGAATACCCGTACAAGAGGTCATTGTCGATATCTTAAATCAGAAGTGGGACCATGAGAGGACCAAGTTCTCTTTGCCTCCATTAATGACTCTTGTACTTGGAGAGCCAGGAGTGGGAGGATCATCAACGCCTTCAATGGTAGGAGCTGTCAAGAAATGGCAAAAATCTGACCCTCAAAAGTCCCTAGACACGTGGAGGAAGTTGTCGCAAGGGAACTCAGAACTTGAAACTCAACTCAATATGTTGAGTAAACTTGCTGCAGAACACTGGGATTCTTATAAATATATCATAAACAGGTGTTCCATGCTGACCTCAGAGCAGTGGATTCATCAAGCCTCAGAACCAAGCCAGCAAACCATCATCAAAGCATTATTAGGAGCAAGAAATGCGATGCTTGAGATCAGGCATCATATGCGCCTGATGGGTGAAGCTGCTGGTGTTCCGATTGAGCCTGACTCACAAACCAAGCTTTTAGATGCTACCATGAATATGGAAGGAGTCCTATTAGCCGGTGTTCCAGGCGCAGGTGGGTTCGATGCTGTTTTTGCCGTGACCTTGGGAGATTCAACCAACAATGTGATTAAATCATGGAGTAAACTAGATACTTTGGCTCTCCTTGTTAGAGAAGATCCTCGTGGCGTTGCTTTGGAAAGCTGTGATCCGCGAACCAAGGCAATTACATCAGCTGTTTCATCAGTTCATATTTAG 3402 45.18 MGYEDDPYRDEDGEPLMDFDHIQSDGEQSPEPYNPDELLDEDIGDWGGRQRSQTPVYDAEEPQARPRKRLIKKSLAGKETVPSNLVDDYDDARDFSADQFVREGSEERKRKRAISSGKKEKRFKVDNKFGSSSSGSKSRLSKKAFSGKGMKDQDGDVKEMWETIAGGASDDDQEGARTVDDDNFIDDSGVDPADRYGSDDEPRSPRYAPEAEEGEEDDEINDLFKMGKKKKKHEKSPAEIALLVENVMAELEVTAEEDADLNRQGKPAVNKLKKLPLLTDVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIREAILKILTDFPIDLEQYDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDQWSRPIFNKSTRFEDMRNMEDERVPFRRPMGKKSGNKAAGIESRDGDLDLDEFSQGRKSSQSSSRQHASRPEATPLDFIVRPQSKIDPDEIRARAKQAVQDQRRMKMNKKLQQLKAPKKKQLQATKLSVEGRGQSQNPSLSIRRFPPIPREPIQHIFLLLPPPGCLGLRRIRSFAGRVDRESGNRDIKDPEHPYSLEELKVITEDAVEVDDEHSYVRVTFTPTVEHCSMATVIGLCLRVKLMRNLPSRYKVDIRVAPGSHATEAAEGDLKSKWIEEEQKWPCKVASAPGKVLVTGGYLVLEKPNAGLVLSTNARFYAIVKPIYEEIKPGSWAWLHVVDDIQARNPFVEKAVEYCVAAACAKFVDNDNKNALHKLLLQGLDITILGCNEFYSYRSQIEARGLPLTSESLASLPPFSSITFNDEESYGENRKPEVAKTGLGSSAAMTAAVVAALLNYLGVVNLSLLTGEQEQKGSADVDLVHIIAQSAHCIAQGKVGSGFDVSSAVYGSQRYVRFSPEVLSSAQAAKNGIPVQEVIVDILNQKWDHERTKFSLPPLMTLVLGEPGVGGSSTPSMVGAVKKWQKSDPQKSLDTWRKLSQGNSELETQLNMLSKLAAEHWDSYKYIINRCSMLTSEQWIHQASEPSQQTIIKALLGARNAMLEIRHHMRLMGEAAGVPIEPDSQTKLLDATMNMEGVLLAGVPGAGGFDAVFAVTLGDSTNNVIKSWSKLDTLALLVREDPRGVALESCDPRTKAITSAVSSVHI 1133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1527342 1546008 - CmoCh19G002270.1 Cmo19g00227 403387

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00227 1133 MobiDBLite consensus disorder prediction 390 512 - -
Cmo19g00227 1133 MobiDBLite consensus disorder prediction 410 426 - -
Cmo19g00227 1133 MobiDBLite consensus disorder prediction 145 159 - -
Cmo19g00227 1133 MobiDBLite consensus disorder prediction 178 210 - -
Cmo19g00227 1133 ProSiteProfiles TFIIS N-terminal domain profile. 298 381 IPR017923 -
Cmo19g00227 1133 MobiDBLite consensus disorder prediction 84 127 - -
Cmo19g00227 1133 TIGRFAM Pmev_kin_ERG8: phosphomevalonate kinase 710 1121 IPR016005 GO:0004631
Cmo19g00227 1133 Pfam GHMP kinases C terminal 1021 1095 IPR013750 -
Cmo19g00227 1133 MobiDBLite consensus disorder prediction 427 442 - -
Cmo19g00227 1133 Pfam Iron-sulfur cluster assembly protein 557 625 IPR002744 -
Cmo19g00227 1133 Gene3D - 655 933 IPR014721 -
Cmo19g00227 1133 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 237 384 IPR035441 -
Cmo19g00227 1133 PANTHER - 656 706 IPR035102 -
Cmo19g00227 1133 MobiDBLite consensus disorder prediction 455 480 - -
Cmo19g00227 1133 Pfam TFIIS helical bundle-like domain 324 378 IPR017923 -
Cmo19g00227 1133 Pfam GHMP kinases N terminal domain 806 879 IPR006204 GO:0005524
Cmo19g00227 1133 MobiDBLite consensus disorder prediction 1 219 - -
Cmo19g00227 1133 SUPERFAMILY Ribosomal protein S5 domain 2-like 657 939 IPR020568 -
Cmo19g00227 1133 Gene3D - 555 633 IPR034904 -
Cmo19g00227 1133 PANTHER - 656 706 - -
Cmo19g00227 1133 PANTHER - 712 1132 - -
Cmo19g00227 1133 PANTHER - 712 1132 IPR035102 -
Cmo19g00227 1133 SUPERFAMILY Fe-S cluster assembly (FSCA) domain-like 557 635 IPR034904 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00227 - - - csv:101214456 898.656
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g00627 Cmo19g00227 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00842 Cmo-Chr4:4202254 Cmo19g00227 Cmo-Chr19:1527342 1.40E-31 dispersed
Cmo16g00718 Cmo-Chr16:3589498 Cmo19g00227 Cmo-Chr19:1527342 1.24E-30 dispersed
Cmo19g00227 Cmo-Chr19:1527342 Cmo02g01686 Cmo-Chr2:9680980 0 wgd
Cmo19g00227 Cmo-Chr19:1527342 Cmo06g00627 Cmo-Chr6:3115672 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g749 . . . . . . . . Cmo06g00627 . . . . . . . . . . . . . . . Cla10g00123 Cam10g0123 Cec10g0132 Cco10g0132 Clacu10g0128 Cmu10g0975 Cre10g0385 Cone8ag0498 Cone12ag0497 . . Lsi07g01156 . Chy04g00132 . . . Bda07g00072 Bda09g00760 Bpe08g00803 Bpe11g00312 . . Sed02g0043 . Cmo19g00227 Cma06g00619 . Car06g00553 . . Cpe15g00185 Bhi05g00433 Tan07g2028 Cmetu04g1055 Lac11g2456 Hepe06g0983 . Lcy12g1980 Cla09g01084 Cam09g1138 Cec09g1145 Cco09g1163 . . Cre09g1101 . Csa03g04572 . Cme04g00155
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003438 2 1 2 0 2 1 2 2 2 1 1 2 2 1 1 2 2 2 2 2 1 2 2 2 2 1 2 1 2 1 48
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11599 PF08544 GHMP_kinases_C 4.20E-07 CL0677 Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00227 Cmo_Chr19 FPKM 11.743957 10.840357 12.962628 13.455386 2.248125 2.913491 1.71042 11.408278 10.020351 11.903946