Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00231 ATGCGTATGGAGCTATTCCCAGCACAGCCAGATTTATCCCTCCAAATTAGCCCTCCAAATACCAATAAACCCTCTTCTTCTTGGATAACAACGCCTTCTCAAGAAGAAGTTGATTTGAGGTTTTGGAATAATCTTAGTTTGGAGTCCACTAAATCCACTCCCAAACACCCCCCTCCACCTCCGCCTCCTAATCATCATCTTCTTCATCATCATCATCATATCTCCGCTCCCCTTTTCGAAACCCTAAACAAAACCCAACACCGACCCGCCATTTTCCACCACGATACGACATCGCTGCTCAACCCGCCACCACCGCCTCCCCCGCTCCCGTTTCCAGGATTCTTGCAACCCATTAGAGGAATTCCGGTGTACCATCAAACAATTAACCCCTCCGGCATCGGTGTCGATGGTGGCCGAGGCATTACTCCCTCTTCCGTCGACCACCGCCAGATTATGATGCGGTCGAGGTTCTTGTCTAGGTTTCCAGCCAAACGAAGCATGAGAGCCCCACGGATGAGATGGACATCAACTCTTCACGCTCGCTTCGTTCATGCCGTCGAACTTCTCGGCGGCCACGAAAGAGCCACACCGAAGTCAGTTCTCGAGCTTATGGATGTCAAAGATCTAACCTTAGCCCATGTCAAATCTCATTTACAGATGTACAGAACAGTGAAGACTACAGACAGAGCTGCAGCTTCTTCAGGCCAATCAGATTTATATGAAAATGCTTCATCTGGGGACACAAGCAATATTGAAGATATAATATTTGATATTCAAAAGCCAGCCACGGGAAGGCAAAATGAGAGCTTAGTTCATCAAACAACAAGGCAAAACCCTCTTCAAGACGAGGATTATCATGCCCTTTGGAGCAATTCTTCAAGGGAAGCTTGGTTGCATGGTTTGCCAAACGATTCTTCTCGGGACCTTTCTTCGTCCCTCGAGAATGATACGGATCTGAAGTGCTCAAATAACGAGAGACTATCGGAAAGAAGCTCATCGTCCGATGATTGTGGAGGGACAAACTCTCACAAGCCAAATTTAGAATTCACATTAGGAAGGCCAATTTGA 1068 47.19 MRMELFPAQPDLSLQISPPNTNKPSSSWITTPSQEEVDLRFWNNLSLESTKSTPKHPPPPPPPNHHLLHHHHHISAPLFETLNKTQHRPAIFHHDTTSLLNPPPPPPPLPFPGFLQPIRGIPVYHQTINPSGIGVDGGRGITPSSVDHRQIMMRSRFLSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDLYENASSGDTSNIEDIIFDIQKPATGRQNESLVHQTTRQNPLQDEDYHALWSNSSREAWLHGLPNDSSRDLSSSLENDTDLKCSNNERLSERSSSSDDCGGTNSHKPNLEFTLGRPI 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1590103 1595192 - CmoCh19G002310.1 Cmo19g00231 403391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00231 355 MobiDBLite consensus disorder prediction 48 69 - -
Cmo19g00231 355 MobiDBLite consensus disorder prediction 13 31 - -
Cmo19g00231 355 Gene3D - 169 226 - -
Cmo19g00231 355 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 354 IPR044847 GO:0000976|GO:0006355|GO:0010158
Cmo19g00231 355 MobiDBLite consensus disorder prediction 1 31 - -
Cmo19g00231 355 MobiDBLite consensus disorder prediction 311 332 - -
Cmo19g00231 355 MobiDBLite consensus disorder prediction 333 347 - -
Cmo19g00231 355 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 170 223 IPR006447 GO:0003677
Cmo19g00231 355 MobiDBLite consensus disorder prediction 305 355 - -
Cmo19g00231 355 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 354 - -
Cmo19g00231 355 SUPERFAMILY Homeodomain-like 167 223 IPR009057 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00638 Cmo19g00231 CCT
Cmo02g01676 Cmo19g00231 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02386 Cmo-Chr4:17784904 Cmo19g00231 Cmo-Chr19:1590103 3.02E-36 dispersed
Cmo14g00893 Cmo-Chr14:4741964 Cmo19g00231 Cmo-Chr19:1590103 2.02E-51 dispersed
Cmo15g00778 Cmo-Chr15:3834432 Cmo19g00231 Cmo-Chr19:1590103 3.71E-32 dispersed
Cmo02g01677 Cmo-Chr2:9623204 Cmo19g00231 Cmo-Chr19:1590103 2.35E-44 transposed
Cmo16g01233 Cmo-Chr16:8835530 Cmo19g00231 Cmo-Chr19:1590103 1.42E-67 wgd
Cmo19g00231 Cmo-Chr19:1590103 Cmo02g01676 Cmo-Chr2:9621080 4.18E-82 wgd
Cmo19g00231 Cmo-Chr19:1590103 Cmo06g00638 Cmo-Chr6:3197778 3.68E-81 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11600 None None None None Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00231 - - cpep:111811344 650.588