Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00231 ATGCGTATGGAGCTATTCCCAGCACAGCCAGATTTATCCCTCCAAATTAGCCCTCCAAATACCAATAAACCCTCTTCTTCTTGGATAACAACGCCTTCTCAAGAAGAAGTTGATTTGAGGTTTTGGAATAATCTTAGTTTGGAGTCCACTAAATCCACTCCCAAACACCCCCCTCCACCTCCGCCTCCTAATCATCATCTTCTTCATCATCATCATCATATCTCCGCTCCCCTTTTCGAAACCCTAAACAAAACCCAACACCGACCCGCCATTTTCCACCACGATACGACATCGCTGCTCAACCCGCCACCACCGCCTCCCCCGCTCCCGTTTCCAGGATTCTTGCAACCCATTAGAGGAATTCCGGTGTACCATCAAACAATTAACCCCTCCGGCATCGGTGTCGATGGTGGCCGAGGCATTACTCCCTCTTCCGTCGACCACCGCCAGATTATGATGCGGTCGAGGTTCTTGTCTAGGTTTCCAGCCAAACGAAGCATGAGAGCCCCACGGATGAGATGGACATCAACTCTTCACGCTCGCTTCGTTCATGCCGTCGAACTTCTCGGCGGCCACGAAAGAGCCACACCGAAGTCAGTTCTCGAGCTTATGGATGTCAAAGATCTAACCTTAGCCCATGTCAAATCTCATTTACAGATGTACAGAACAGTGAAGACTACAGACAGAGCTGCAGCTTCTTCAGGCCAATCAGATTTATATGAAAATGCTTCATCTGGGGACACAAGCAATATTGAAGATATAATATTTGATATTCAAAAGCCAGCCACGGGAAGGCAAAATGAGAGCTTAGTTCATCAAACAACAAGGCAAAACCCTCTTCAAGACGAGGATTATCATGCCCTTTGGAGCAATTCTTCAAGGGAAGCTTGGTTGCATGGTTTGCCAAACGATTCTTCTCGGGACCTTTCTTCGTCCCTCGAGAATGATACGGATCTGAAGTGCTCAAATAACGAGAGACTATCGGAAAGAAGCTCATCGTCCGATGATTGTGGAGGGACAAACTCTCACAAGCCAAATTTAGAATTCACATTAGGAAGGCCAATTTGA 1068 47.19 MRMELFPAQPDLSLQISPPNTNKPSSSWITTPSQEEVDLRFWNNLSLESTKSTPKHPPPPPPPNHHLLHHHHHISAPLFETLNKTQHRPAIFHHDTTSLLNPPPPPPPLPFPGFLQPIRGIPVYHQTINPSGIGVDGGRGITPSSVDHRQIMMRSRFLSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDLYENASSGDTSNIEDIIFDIQKPATGRQNESLVHQTTRQNPLQDEDYHALWSNSSREAWLHGLPNDSSRDLSSSLENDTDLKCSNNERLSERSSSSDDCGGTNSHKPNLEFTLGRPI 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1590103 1595192 - CmoCh19G002310.1 Cmo19g00231 403391

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00231 355 MobiDBLite consensus disorder prediction 48 69 - -
Cmo19g00231 355 MobiDBLite consensus disorder prediction 13 31 - -
Cmo19g00231 355 Gene3D - 169 226 - -
Cmo19g00231 355 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 354 IPR044847 GO:0000976|GO:0006355|GO:0010158
Cmo19g00231 355 MobiDBLite consensus disorder prediction 1 31 - -
Cmo19g00231 355 MobiDBLite consensus disorder prediction 311 332 - -
Cmo19g00231 355 MobiDBLite consensus disorder prediction 333 347 - -
Cmo19g00231 355 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 170 223 IPR006447 GO:0003677
Cmo19g00231 355 MobiDBLite consensus disorder prediction 305 355 - -
Cmo19g00231 355 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 354 - -
Cmo19g00231 355 SUPERFAMILY Homeodomain-like 167 223 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00231 - - - cpep:111811344 650.588
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g00638 Cmo19g00231 CCT
Cmo02g01676 Cmo19g00231 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02386 Cmo-Chr4:17784904 Cmo19g00231 Cmo-Chr19:1590103 3.02E-36 dispersed
Cmo14g00893 Cmo-Chr14:4741964 Cmo19g00231 Cmo-Chr19:1590103 2.02E-51 dispersed
Cmo15g00778 Cmo-Chr15:3834432 Cmo19g00231 Cmo-Chr19:1590103 3.71E-32 dispersed
Cmo02g01677 Cmo-Chr2:9623204 Cmo19g00231 Cmo-Chr19:1590103 2.35E-44 transposed
Cmo16g01233 Cmo-Chr16:8835530 Cmo19g00231 Cmo-Chr19:1590103 1.42E-67 wgd
Cmo19g00231 Cmo-Chr19:1590103 Cmo02g01676 Cmo-Chr2:9621080 4.18E-82 wgd
Cmo19g00231 Cmo-Chr19:1590103 Cmo06g00638 Cmo-Chr6:3197778 3.68E-81 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g717 . . . . . . . . Cmo06g00638 . Cma02g01632 . Car02g01391 . . . . . . . . . . . Cla10g00132 Cam10g0130 Cec10g0139 Cco10g0139 Clacu10g0135 Cmu10g0982 Cre10g0392 . . . . . . Chy04g00122 . . Blo19g00245 . . . . . . . Cmo02g01676 Cmo19g00231 Cma06g00631 . Car06g00565 . . Cpe15g00191 . . . . . . . . . . . . . . . . . Cme04g00145
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo06g01253 CST 12 268 G2-like Transcription Factor Family AT3G24120 62.2 1.8e-76 283.5
Cmo14g01946 CST 1 257 G2-like Transcription Factor Family AT3G24120 61.3 8.9e-76 281.2
Cmo20g00312 . 22 194 G2-like Transcription Factor Family AT3G24120 54.6 6.0e-40 162.2
Cmo19g01150 . 18 168 G2-like Transcription Factor Family AT3G24120 58.3 7.9e-40 161.8
Cmo02g01694 . 4 151 G2-like Transcription Factor Family AT3G24120 54.3 1.1e-38 157.9
Cmo19g00220 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 1.3e-37 154.5
Cmo07g00367 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.8e-37 153.3
Cmo19g00231 CCT,CST 152 354 G2-like Transcription Factor Family AT5G16560 52.2 6.7e-42 169.1
Cmo09g00190 CCT 1 165 G2-like Transcription Factor Family AT5G42630 56.9 1.3e-39 160.6
Cmo12g00449 CCT,CST 4 143 G2-like Transcription Factor Family AT5G42630 58.3 9.4e-38 154.5
Cmo04g02159 . 20 256 G2-like Transcription Factor Family AT1G25550 52.2 1.1e-48 191.0
Cmo03g01093 . 1 304 G2-like Transcription Factor Family AT5G05090 54.3 5.7e-74 275.0
Cmo07g01147 . 1 299 G2-like Transcription Factor Family AT5G05090 54.5 1.4e-72 270.4
Cmo14g00500 . 1 277 G2-like Transcription Factor Family AT5G05090 58.6 1.7e-70 263.5
Cmo06g00028 . 1 285 G2-like Transcription Factor Family AT5G05090 52.9 5.0e-70 261.9
Cmo06g01253 CST 12 316 G2-like Transcription Factor Family AT4G13640 56.9 9.5e-62 234.6
Cmo14g01946 CST 1 293 G2-like Transcription Factor Family AT4G13640 57.6 5.2e-60 228.8
Cmo02g01770 CST 87 356 G2-like Transcription Factor Family AT3G04450 52.4 7.3e-57 218.8
Cmo06g01253 CST 12 268 G2-like Transcription Factor Family AT3G24120 62.2 1.8e-76 283.5
Cmo14g01946 CST 1 257 G2-like Transcription Factor Family AT3G24120 61.3 8.9e-76 281.2
Cmo20g00312 . 22 194 G2-like Transcription Factor Family AT3G24120 54.6 6.0e-40 162.2
Cmo19g01150 . 18 168 G2-like Transcription Factor Family AT3G24120 58.3 7.9e-40 161.8
Cmo02g01694 . 4 151 G2-like Transcription Factor Family AT3G24120 54.3 1.1e-38 157.9
Cmo19g00220 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 1.3e-37 154.5
Cmo07g00367 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.8e-37 153.3
Cmo05g00868 . 7 200 G2-like Transcription Factor Family AT1G69580 50.5 1.2e-36 151.4
Cmo19g01150 . 1 379 G2-like Transcription Factor Family AT1G79430 53.6 3.0e-86 316.2
Cmo10g01273 . 1 376 G2-like Transcription Factor Family AT1G79430 50.9 6.7e-78 288.5
Cmo20g00312 . 1 366 G2-like Transcription Factor Family AT1G79430 53.0 1.5e-77 287.3
Cmo06g01253 CST 26 204 G2-like Transcription Factor Family AT1G79430 55.7 2.1e-39 160.6
Cmo14g01946 CST 29 193 G2-like Transcription Factor Family AT1G79430 59.4 7.5e-37 152.1
Cmo03g00639 . 84 327 G2-like Transcription Factor Family AT2G01060 59.7 1.7e-53 206.8
Cmo07g00368 . 66 323 G2-like Transcription Factor Family AT2G01060 56.9 1.9e-52 203.4
Cmo07g01147 . 1 299 G2-like Transcription Factor Family AT3G10760 62.5 2.7e-89 326.2
Cmo03g01093 . 1 304 G2-like Transcription Factor Family AT3G10760 60.2 7.4e-87 318.2
Cmo06g00028 . 1 285 G2-like Transcription Factor Family AT3G10760 59.2 1.1e-85 314.3
Cmo14g00500 . 1 277 G2-like Transcription Factor Family AT3G10760 58.6 1.5e-79 293.9
Cmo07g01147 . 1 204 G2-like Transcription Factor Family AT2G40970 62.0 7.5e-60 228.0
Cmo14g00500 . 1 193 G2-like Transcription Factor Family AT2G40970 59.4 1.4e-58 223.8
Cmo03g01093 . 1 204 G2-like Transcription Factor Family AT2G40970 58.5 5.4e-58 221.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001608 1 1 2 1 2 2 4 2 2 2 2 2 4 3 2 5 2 2 4 2 2 2 2 2 2 2 2 6 2 2 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11600 None None None None Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00231 Cmo_Chr19 FPKM 3.562734 4.378884 9.861355 8.423116 19.901815 22.103634 16.371763 1.715856 2.448385 1.818749