Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00233 ATGAGTTTTCCATTTGTGGGTCTGAATTTTAACACAACCTTCCTCCTCTTCTTCTTCTTCATCCCAACCACTTTCTCCGACCACCGCCGCAATCTCCGCCGCCAACCACCGCCAAAACCAAGAACAATCTTCATTTGGTGGAATTTCCTTGGTCAGTGTGGTGTAACTCCAAGAATGTATGGAGATTGCCAAGTGATATCAAGCAATATGGGAACAAACATAAACCCTAATTTCAATTTCATCTCCAATTTCCAACACTTTTCTTCCATATTGCCTAAGGAGGAAAATGGGGTATTGAGAGGGAAAGAAGATATGGAAAGTGGGTCTGGAAGTGAGCAGCTTGTTGAAGAACATCAAGGAATAATTGAAATGGATAGCAATAATGATAATGTTCTTCACCAAAATTTGAAGAAGAAACGCTATCATAGGCATACTGCTCGTCAGATCCAAGAAATGGAGGCTTTGTTTAAGGAATGTCCACACCCTGATGACAAGCAGAGGCTTAAACTTAGCCAAGAACTCGGACTCAAACCTCGTCAAGTTAAGTTTTGGTTCCAAAATCGTAGAACCCAGATGAAGGCACAACACGACAGAGCTGATAATGTCATACTTCGAGCTGAAAATGAAACCTTAAAAAATGAGAATTATAGACTGCAAACTGCCCTAAGAAACATCATATGCCCTAGCTGTGGAGGGCAGGGTATCCTTGGGGAACCTAGCTTGGATGAACAGCAGCTTCGTCTCGAGAATGCTAGGCTTCGAGATCAGTTGGAACAAGTTTGCTCGATGACCACAAGATACACTGGTCGCCCAATTGAAGGGATGCCCATGCAACCATCTTTGGATTTGGACATGAATATATACTCGAGGCAATACACGGAGGCCATGGTTTCGTCCTCCGACATGATGTCAATGCCCTCGATGCTCCCGCCCGAGGCTGCCCACTTCTCGAAGGGCGACCTATTAATTGATGAGGAAAAGACACTGGCAATGGACTTGGCTGTGTCGTCCATAGCTGAACTTGTTAAGATGTGTCGCTCGACTGAGCCTCTTTGGGTTCGAGATAGCGAGAGCGGTAAGGACATTCTAAATGTCGAAGAGCATGCCAGGATGTTTCCATGGCCATTGAACCTCAAGCAACACTTGATCAATGAGTTTAGGACCGAAGCCACTCGTGACAGCGCCGTTGTTATAATGAATAGCATAACTCTTGTCGACGCCTTTCTTGATGCCAACAAATGGATGGAACTATTTCCTTCAATTGTGGCCAAAGCAAGAACTATTCAAGTCATTTCATCAAGTGTTTCAGGCCATGCTAGTGGTTCCCTTCAGCTGATGTATGCTGAACTTCAAGCCCTTTCTCCACTCGTTCCGACGAGAGAAGCTCACTTTCTCCGGTGCTGCCAACAGAACGCCGACGAAGGAAGCTGGGCCATCGTCGATTTCCCGATCGACACCTTTCACGACAGCCTTCAGCACTCGTTTCCGAGATACAGAAGAAAGCCCTCTGGTTGCATTATTCAAGACATGCCCAATGGATACTCTAGGGTTACATGGGTGGAGCATGGAGAGATAGAAGAGAAACCAATCCATCAAATATTCAATCACTTTGTGCATAGTGGAATGGCTTTTGGGGCACACCGTTGGTTGGCTATCTTACAAAGGCAATGCGAGAGAATTGCAAGTCTCATGGCTAGAAACATCTCTGATCTTGGAGTAATACCTTCACCGGAAGCTAGACAAAACCTAATGAAACTAGCACAAAGAATGATCAGAACTTTCTCCGTCAACATAAGCACCTCCGGTGGCCAGTCGTGGACGGCGTTATCTGAATCTCCTGACGATACTGTTCGTATAACCACACGAAAAATCGTCGAGCCTGGCCAACCTAATGGGGTTATTCTCAGCGCCGTCTCGACCACTTGGCTTCCTTATCCTCATTATCGAGTCTTCGATCTTCTTCGAGACGAACGTCGACGGTCTCAGCTCGAGGTTCTTTCGAATGGGAATTCGCTGCATGAGGTGGCTCACATTGCCAATGGCTCTCACCCTGGAAATTGCATCTCTCTTCTTCGTATCAATGTGGCCAGCAACTCGTCCCAGCACGTCGAGCTAATGCTGCAAGAGAGCTGCACGGATCAGTCGGGCAGCCTCGTTGTCTACGCAACGATCGATGTCGATTCAATTCAATTAGCCATGAGTGGAGAAGACCCATCTTGCATTCCTCTCCTCCCCATAGGATTTTCCATTGTCCCCGTCGTTGGGTCTACCGTTGACGGACACCCATCACCACCACCCGAAGACGGTGTCGCTAACTCCGGCTGCCTCCTTACCGTCGGCTTGCAAGTTCTAGCCAGCACTATTCCATCAGCAAAGCTCAACCTATCAAGCGTTACTGCCATCAACAACCACCTATGTAACACGGTGCACCAAATCAACGCCGCTCTCGGCAGCCCGGCTAGTATCGAGAACGGTAATACCATTGCTGAGCCTAATAATGCACCGGCGCCGGCACCGGCGCCTGCGCCAGCACCCAAGCAATAA 2544 47.64 MSFPFVGLNFNTTFLLFFFFIPTTFSDHRRNLRRQPPPKPRTIFIWWNFLGQCGVTPRMYGDCQVISSNMGTNINPNFNFISNFQHFSSILPKEENGVLRGKEDMESGSGSEQLVEEHQGIIEMDSNNDNVLHQNLKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMKAQHDRADNVILRAENETLKNENYRLQTALRNIICPSCGGQGILGEPSLDEQQLRLENARLRDQLEQVCSMTTRYTGRPIEGMPMQPSLDLDMNIYSRQYTEAMVSSSDMMSMPSMLPPEAAHFSKGDLLIDEEKTLAMDLAVSSIAELVKMCRSTEPLWVRDSESGKDILNVEEHARMFPWPLNLKQHLINEFRTEATRDSAVVIMNSITLVDAFLDANKWMELFPSIVAKARTIQVISSSVSGHASGSLQLMYAELQALSPLVPTREAHFLRCCQQNADEGSWAIVDFPIDTFHDSLQHSFPRYRRKPSGCIIQDMPNGYSRVTWVEHGEIEEKPIHQIFNHFVHSGMAFGAHRWLAILQRQCERIASLMARNISDLGVIPSPEARQNLMKLAQRMIRTFSVNISTSGGQSWTALSESPDDTVRITTRKIVEPGQPNGVILSAVSTTWLPYPHYRVFDLLRDERRRSQLEVLSNGNSLHEVAHIANGSHPGNCISLLRINVASNSSQHVELMLQESCTDQSGSLVVYATIDVDSIQLAMSGEDPSCIPLLPIGFSIVPVVGSTVDGHPSPPPEDGVANSGCLLTVGLQVLASTIPSAKLNLSSVTAINNHLCNTVHQINAALGSPASIENGNTIAEPNNAPAPAPAPAPAPKQ 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1625115 1635047 - CmoCh19G002330.1 Cmo19g00233 403393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00233 847 CDD START_ArGLABRA2_like 327 558 - -
Cmo19g00233 847 ProSiteProfiles START domain profile. 323 562 IPR002913 GO:0008289
Cmo19g00233 847 Gene3D - 124 206 - -
Cmo19g00233 847 ProSiteProfiles 'Homeobox' domain profile. 135 195 IPR001356 GO:0003677
Cmo19g00233 847 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 123 823 IPR042160 -
Cmo19g00233 847 SUPERFAMILY Homeodomain-like 127 195 IPR009057 -
Cmo19g00233 847 SUPERFAMILY Bet v1-like 596 813 - -
Cmo19g00233 847 CDD homeodomain 138 196 IPR001356 GO:0003677
Cmo19g00233 847 SUPERFAMILY Bet v1-like 324 561 - -
Cmo19g00233 847 PANTHER - 123 823 - -
Cmo19g00233 847 SMART HOX_1 137 199 IPR001356 GO:0003677
Cmo19g00233 847 MobiDBLite consensus disorder prediction 823 847 - -
Cmo19g00233 847 Pfam Homeodomain 138 193 IPR001356 GO:0003677
Cmo19g00233 847 Coils Coil 189 209 - -
Cmo19g00233 847 Gene3D - 364 557 IPR023393 -
Cmo19g00233 847 Pfam START domain 334 559 IPR002913 GO:0008289
Cmo19g00233 847 ProSitePatterns 'Homeobox' domain signature. 170 193 IPR017970 GO:0000981|GO:0006355
Cmo19g00233 847 SMART START_1 332 559 IPR002913 GO:0008289
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00233 Cmo-Chr19:1625115 Cmo19g00954 Cmo-Chr19:8710347 0 dispersed
Cmo19g00233 Cmo-Chr19:1625115 Cmo02g01673 Cmo-Chr2:9599233 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11602 PF01852 START 4.20E-43 CL0209 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00233 - - csv:101212772 1395.18