Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00236 ATGAGAAAGACCGGAAGAGGAGGCCGGCGGGCTGATCAGAATCGAACTCAAGAGGTTTGGGTTGCCAAACACTCGAATCAGACTCAGAATCGCGCTTCTACCTCCGGCTCACAACGCTTGGAGCCCGGTAATCGTCCTTCTACTGGTCGTAGTTCCACCTACGAGCATGAGAATCGCCGCCGCCCCCGTCCCCGACCTGTCGAGAAAGCGGAGGTGAGTGCTTTAGCCGATGGAATAGAATCTTTCACTTGCGACGAAAAGCCTGTGGAAATGGAGGAGAGATGCGGAGATGTTGTGAATTCGAACTGTGAGATTAAAGACGAGACGGCCGGAAACTCTGGCTCAAGTGAGGCTACGGATGATGTTTACAGTAGGTTGGAGATGCTGCAGCGCAGCTTCGAGGAGCCGGAGTTGCCGGAGGAGCAGCTTAGGATCAATGATCAGTTGCAGGAAGATGAGTTGCTGGCTTTGGAGTCCATATATGGAGAAAATATCCATATCCTCGATGAACACAGAGGGCAGCGCCGTTTCCAGATTTCCATACACATTGAGTGTCCTGGTGATATTACTGTTACTGCAAATCTCAACTCATCTGGTGCTCTTGAGATGAAAAGAACAAATTCAGATAATTTCTCTTGTTCTTTCAAAGTCAAGTATCTTAATCCCATTGTTTTGACCTGTTTATTACCGAAATCGTATCCGAGTCACCTACCTCCATATTATACAATCTCTATTCAGTGGTTGGACGCCACTAGAATTTCCCATCTTTGCTCTGTATTGGATGCGATATGGACGGAACAAGCAGGGCAGGAAGTTGTATATCAATGGGTAGAATGTCTACAAACGTCATCTCTGGTTTATCTTGAGATAGATAAAGAGATTACGCTTGGTCCTTACAACAAGGGACATTCGGGAGATATTCGAGCAGTTTCGGGAAGTGTTTCTCCAGAAGTTGATGTTCCTGCCATTGTAAATTATGACAATCAGAGACGTGAGGAGGACTTCTGCATGAACTTGCAGGAATGCTGCATCTGTTTAAGTCAGTTTGCAGGTACAAAGTTTGTAAGATTTCCATGTAAGCATTACTTTTGTTGGAAATGCATGGAGACATACTCAAACATGCATGTCAAGGAAGGCACCGTTAGCAAACTCAAATGTCCAGATGCCAAATGCGATCTTATGCTTCCTCCTGGTCTTTTGAAGCAATTGCTTGGTGCTGAGGAGTTTGAAAGATGGGAATCCATGTTGCTCACGAAAACACTGGAGTCAATGTCCGATGTAGTCTATTGCCCAAGGTGTGAAACCCCCTGCCTCGAGGACGTAGATCATGATGCTCAATGCTCGAAGTGTTACTTTAGTTTTTGTACACTCTGTAGCGAGAGACGTCATGTTGGAATTGAATGTATGACTCCAGAAATGAAGCTTCGTCTTCTTGAGGAGCGTCAAAGTTCATCTCAGTTAAGTAGTGATCAAAGACGAAAGGAACGTGAGATGATAAATGAGCTTATGAGTGTCAAGGAAATACTTCGCGATGCCAAGCAATGCCCATCTTGCAAAATGGCAATATCACGGACCGAAGGTTGCAATAAGATGGTTTGCAATAACTGTGGACAGTATTTCTGTTACCGCTGCAGCAAGGCAATTGATGGATATGACCATTTCAGGGAGGGCACATGTGAATTGTTCCCGCAAGAAACCATTCAACAGTGGGAAGAGCGCATGAATGCACGGCAGCTGTTGGGCCAGATTCATGCAGAACTTTTTCCTGAAAATGGTCATCCATGTCCTAATTGTGGTCAAATTAATGCCAAGGTTGGCAATAACAATCACATACGTTGCTGGGCGTGTCAAAACCACTACTGCTATCTATGCAAGAAAGTTGTGAAGCGCAGCTCCCAGCATTATGGACCCAAGGGATGCAAACAACACACAGCTGAGTCAGACATAGAACGGAAGACGTGGAAGAACGTTACTCCGGGCTTACTTCATTCGAAATTTGGGATCGCAATGAATACCTCGTCGCCGGCTAATTCTTCCATTTCTACCACACCGGTTGCCGGAAGATGTACCACTAATGCCGCAATGTCTCTTGACGATTTTCGCTTCCCCGCCAATTTAGTTTCCCTACAAGAGCGCAAGGACGAGGCCATGAGCGCTCTTAAATCTAATATAATGGCTGCACTGAACAAGGAGGTCAAATCTCTGGATGATGATAACTGGATGTTTGAAGGTCCTCGCTCTCGTATCAACCTTATGTCACGACAAGGTGCTAATTGCCATGCAATTCCATATCAGGTGCTCATTTCCTCAAAAAGACAGAAGAGAAAACAAGATGATGGGCCAGCTTGA 2349 45.59 MRKTGRGGRRADQNRTQEVWVAKHSNQTQNRASTSGSQRLEPGNRPSTGRSSTYEHENRRRPRPRPVEKAEVSALADGIESFTCDEKPVEMEERCGDVVNSNCEIKDETAGNSGSSEATDDVYSRLEMLQRSFEEPELPEEQLRINDQLQEDELLALESIYGENIHILDEHRGQRRFQISIHIECPGDITVTANLNSSGALEMKRTNSDNFSCSFKVKYLNPIVLTCLLPKSYPSHLPPYYTISIQWLDATRISHLCSVLDAIWTEQAGQEVVYQWVECLQTSSLVYLEIDKEITLGPYNKGHSGDIRAVSGSVSPEVDVPAIVNYDNQRREEDFCMNLQECCICLSQFAGTKFVRFPCKHYFCWKCMETYSNMHVKEGTVSKLKCPDAKCDLMLPPGLLKQLLGAEEFERWESMLLTKTLESMSDVVYCPRCETPCLEDVDHDAQCSKCYFSFCTLCSERRHVGIECMTPEMKLRLLEERQSSSQLSSDQRRKEREMINELMSVKEILRDAKQCPSCKMAISRTEGCNKMVCNNCGQYFCYRCSKAIDGYDHFREGTCELFPQETIQQWEERMNARQLLGQIHAELFPENGHPCPNCGQINAKVGNNNHIRCWACQNHYCYLCKKVVKRSSQHYGPKGCKQHTAESDIERKTWKNVTPGLLHSKFGIAMNTSSPANSSISTTPVAGRCTTNAAMSLDDFRFPANLVSLQERKDEAMSALKSNIMAALNKEVKSLDDDNWMFEGPRSRINLMSRQGANCHAIPYQVLISSKRQKRKQDDGPA 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1649353 1659138 - CmoCh19G002360.1 Cmo19g00236 403396

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00236 782 ProSiteProfiles RWD domain profile. 152 287 IPR006575 GO:0005515
Cmo19g00236 782 SUPERFAMILY RING/U-box 586 643 - -
Cmo19g00236 782 ProSitePatterns Zinc finger RING-type signature. 359 368 IPR017907 -
Cmo19g00236 782 SUPERFAMILY RING/U-box 501 554 - -
Cmo19g00236 782 MobiDBLite consensus disorder prediction 1 74 - -
Cmo19g00236 782 Gene3D Ubiquitin Conjugating Enzyme 140 289 IPR016135 -
Cmo19g00236 782 SUPERFAMILY RING/U-box 339 423 - -
Cmo19g00236 782 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 338 425 IPR013083 -
Cmo19g00236 782 SMART ring_2 515 598 IPR001841 -
Cmo19g00236 782 SMART ring_2 342 389 IPR001841 -
Cmo19g00236 782 SUPERFAMILY UBC-like 146 282 IPR016135 -
Cmo19g00236 782 Pfam IBR domain, a half RING-finger domain 507 548 IPR002867 -
Cmo19g00236 782 Pfam IBR domain, a half RING-finger domain 410 468 IPR002867 -
Cmo19g00236 782 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 128 586 IPR031127 GO:0004842|GO:0016567
Cmo19g00236 782 SMART ibrneu5 410 468 IPR002867 -
Cmo19g00236 782 SMART ibrneu5 497 559 IPR002867 -
Cmo19g00236 782 SMART ibrneu5 568 640 IPR002867 -
Cmo19g00236 782 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 128 586 - -
Cmo19g00236 782 MobiDBLite consensus disorder prediction 18 51 - -
Cmo19g00236 782 ProSiteProfiles TRIAD supradomain profile. 338 564 IPR044066 -
Cmo19g00236 782 Gene3D - 483 587 - -
Cmo19g00236 782 SUPERFAMILY RING/U-box 410 472 - -
Cmo19g00236 782 ProSiteProfiles Zinc finger RING-type profile. 342 390 IPR001841 -
Cmo19g00236 782 MobiDBLite consensus disorder prediction 52 70 - -
Cmo19g00236 782 SMART RWD2001b 152 287 IPR006575 GO:0005515
Cmo19g00236 782 Pfam RWD domain 148 283 IPR006575 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00236 K11971 RNF14, ARA54; E3 ubiquitin-protein ligase RNF14 [EC:2.3.2.31] - csv:101211646 1094.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00236 Cmo-Chr19:1649353 Cmo20g00877 Cmo-Chr20:4428968 1.55E-10 dispersed
Cmo19g00236 Cmo-Chr19:1649353 Cmo08g00213 Cmo-Chr8:1264553 2.83E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g699 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00114 . Blo03g00874 . Bda07g00086 . . Bpe11g00323 . . Sed01g4129 . Cmo19g00236 . . . . . Cpe15g00198 Bhi05g00464 Tan07g2001 Cmetu04g1279 Lac11g2439 Hepe06g1792 . Lcy12g1964 Cla09g01103 Cam09g1156 Cec09g1165 Cco09g1180 . . Cre09g1118 . Csa03g04588 . Cme04g00137
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011677 1 1 1 0 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00236 Cmo_Chr19 FPKM 30.508402 34.361252 53.327042 54.079929 23.751638 21.198004 22.069897 67.038765 65.717987 65.104301