Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00237 ATGAGAAGCCATGGATCATCACCATGTTCGTACGAGGAGGAGGCCATGGACAAGGAGGATGAACACAAAGTGAAGAAGAAGAAGAAGGAGAACCAAAACAAAGTTGCTTTTTATAAGCTTTTTGCTTTTGCTGATTGTTATGATTATTTTCTCATGGCTTTTGGTTCCATTGGAGCTTGTCTTCATGGTGCTTCTGTTCCTGTCTTCTTCATCTTCTTTGGGAAGCTTATTAATATCATTGGTATGGCTTATCTCTTCCCCGAAGAAGCTGCTCCAAAAGTTGCCAAGTACTCTTTGGATTTTTTATACCTAAGTGTGGCTATACTATTCTCATCATGGGCAGAGGTGGCTTGTTGGATGCACAGTGGAGAGAGACAAGCAGCCAAAATGAGAATGGCTTATTTAAGATCAATGTTGAGTCAAGACATTAGCCTCTTTGACACTGAAGCTTCAACTGGTGAAGTCATTGCTGCTATTACAAGTGATATTGTTGTTGTTCAAGACGCCATTTCCGAGAAGGTGGGGAACTTTTTGCACTATATAAGCCGGTTTATATCAGGGTTTATCATTGGATTTGTGAGGGTATGGCAAATCAGTCTTGTCACATTATCTATTGTTCCCTTGATTGCACTTGCTGGTGGTCTCTATGCTTTTGTCACCATTGGACTTATTGCCAAAATAAGAAAATCCTATGTCAAGGCTGGTGAGATTGCTGAAGAGATTCTAGGAAATGTAAGAACAGTTCAAGCATTTGCTGGGGAAGAAAGGGCTGTAGGATTATACAAAGGAGCTCTCAGGAATACCTACAAGTATGGCAGAAAGGCAGGGCTGGCTAAGGGACTTGGCCTGGGATCGATGCATTGTGTTCTTTTCTTGTCATGGGCTCTGCTAGTTTGGTTTACCAGCATTGTTGTTCATAAGGGCATTGCCAATGGTGGAGACTCCTTCACCACAATGCTTAATGTTGTCATTTCTGGCCTGTCACTTGGGCAGGCTGCACCAGATATTTCTGCCTTCGTTCGAGCAAAGGCAGCAGCGTATCCTATTTTTCAGATGATAGAAAGAAACACAGTTAGCAAAAGCAGCTCCAAAATTGGTCGGAAACTAAACAAGCTCGACGGTCATATTCAATTCAAGGATGTCAGTTTCAGCTATCCTTCTCGTTCGGATGTAATTATATTTAATAAGTTATCTCTCGATATTCCTGCGGGCAAGATTGTAGCTCTTGTGGGAGGAAGTGGGTCAGGAAAGAGCACGGTCATATCTTTGATCGAACGGTTCTATGAACCGATTTCTGGAGAGATTCTACTAGATGGTAATAACATCAAGGAGCTGGATCTCAAATGGCTTAGGCAGCAAATTGGTCTGGTCAATCAAGAGCCTGCCCTCTTTGCTACGAGCATTAGGGAGAACATTCTATATGGAAAAGACGATGCTACGCTCGAGGACATCACACGTGCAGCGAAACTTTCTGAGGCGTTATCGTTTATAAACAATCTCCCTGAAAGATTCGAAACTCAGGTTGGTGAAAGAGGGGTCCAATTATCTGGGGGACAAAAGCAAAGGATTGCAATATCTCGTGCAATCGTTAAAAATCCATCGATCCTGCTGTTGGATGAGGCAACCAGTGCACTAGATGCAGAATCCGAGAAGAGTGTTCAAGAAGCACTCGATCGTGTCATGGTTGGTCGAACGACTGTAGTGGTCGCTCATCGTCTATCTACCATAAGGAATGCAGATGTGATTGCTGTCGTTCAAGAGGGGAAGATAGTTGAAACTGGAAGCCATGATGAGCTCATTTCAAACCCGGACAGTGTTTATGCATCACTTGTACAGTTTCAAGAAACGGCATCTCTGCAACGCCATCCTTCGATTGGACAGTTGGGTCGACCACCAAGTATAAAGTACTCGCGAGAATTATCTCGCACTACAACAAGCTTTGGTGCGAGTTTTCGCTCTGAGAAAGAATCTCTGGGACGGATTGGAGTTGATGGAATGGAAATGGAGAAACCGAAGCATGTTTCAGCAAAAAGACTATACTCCATGGTTGGACCGGATTGGATGTATGGAGTCGTTGGCGTCATTGGAGCGTTCGTTACGGGATCCCAGATGCCCCTTTTTGCTCTTGGGGTCTCTCAGGCTCTTGTTGCTTTTTATATGGACTGGAATACAACTCAACATGAGATCAAGAAGATTTCTTTGCTTTTCTGTGGTGGTGCAGTCTTAACCGTCATTTTTCATGCAGTCGAGCATCTCTGTTTCGGAATTATGGGAGAGCGACTCACTCTTCGAGTTCGAGAAAAGATGTTCCATGCTATGTTGAGAAACGAGATAGGATGGTTCGATGATATAGACAACACGAGTGCTATGCTTTCGTCACGCCTAGAAACTGATGCAACTTTGTTACGAACTATAGTTGTCGACCGCTCGACAATTCTTCTGCAGAATCTAGCTTTGGTCGTTGCATCGTTCATCATTGCATTCATATTGAATTGGAGAATCACTTTAGTTGTCCTGGCTACTTATCCATTGATCATTAGCGGTCACATTAGCGAGAAACTTTTTATGCAAGGCTATGGTGGAAATTTGAGTAAAGCATACCTGAAAGCCAATACACTGGCCGGTGAGGCAGTTGGCAATATTAGAACTGTTGCTGCATTTTGTTCCGAGGAGAAGGTCCTCGATCTATATGCTAAGGAGCTTGTTGAGCCCTCGAGACGTTCACTTAAACGTGGACAGATCGCTGGCATATTCTACGGTGTCTCGCAGTTCTTCATCTTTTCATCTTATGGTTTGGCCTTGTGGTACGGTTCGGTCTTGATGGGACAGGGGCTTGCTAGCTTCAAATCTATTATGAAAGCATTCATGGTTTTGATAGTAACAGCATTAGCAATGGGTGAGACTTTGGCACTAGCCCCTGACCTTTTAAAGGGAAATCAGATGGTGGCATCAGTGTTCGAGGTGATGGATCGACAAACAGAGGTGTCGGGCGATGTCGGTGAAGAGCTAAATGTCGTGGAGGGTACCATTGAGCTGAAGAATGTCGAGTTCAGCTATCCATCAAGACCAGATGTTTTGATCTTCAAAGATTTCAATCTTAAAGTGAGATCAGGCAAGAGTATAGCCTTAGTTGGGCAAAGCGGCTCAGGGAAAAGCTCTGTTCTAGCCCTTATACTGCGATTCTACGATCCGATAGCTGGGAGGGTTATGATTGACGGGAGAGATATAAAAAAACTGAAGGTCAAATCTCTGAGAAAGCACATAGGCCTCGTCCAACAAGAACCGGCTCTTTTCGCCACGTCAATTTACGAGAACATTCTTTACGGGAAAGAAGGAGCTTCCGAAGCAGAAGTATTCGAAGCAGCAAAGCTCGCCAACGCGCATACCTTCATCAGTGCTCTCCCTGAAGGCTACTCAACAAAAGTCGGTGAAAGAGGGATCCAACTCTCGGGTGGGCAACGACAGAGGATAGCCATTGCACGAGCAGTCCTGAAGAACCCAGAAATCCTACTACTCGACGAAGCCACGAGCGCTCTCGACGTCGAATCAGAACGCGTCGTTCAACAAGCCTTAGATAGACTGATGAAGCACAGAACAACTGTGGTGGTTGCTCACAGGCTTTCCACCATTAAAAACTGTGACCAAATCTCAGTGATCCAAGATGGTAAGATAGTAGAACAAGGGACTCATTCGAGCCTTTGTGAGAACAAGAATGGAGCTTATTACAAGTTGATCAACATCCAACAACAGCAACAACGACAGTGA 3765 44.38 MRSHGSSPCSYEEEAMDKEDEHKVKKKKKENQNKVAFYKLFAFADCYDYFLMAFGSIGACLHGASVPVFFIFFGKLINIIGMAYLFPEEAAPKVAKYSLDFLYLSVAILFSSWAEVACWMHSGERQAAKMRMAYLRSMLSQDISLFDTEASTGEVIAAITSDIVVVQDAISEKVGNFLHYISRFISGFIIGFVRVWQISLVTLSIVPLIALAGGLYAFVTIGLIAKIRKSYVKAGEIAEEILGNVRTVQAFAGEERAVGLYKGALRNTYKYGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSIVVHKGIANGGDSFTTMLNVVISGLSLGQAAPDISAFVRAKAAAYPIFQMIERNTVSKSSSKIGRKLNKLDGHIQFKDVSFSYPSRSDVIIFNKLSLDIPAGKIVALVGGSGSGKSTVISLIERFYEPISGEILLDGNNIKELDLKWLRQQIGLVNQEPALFATSIRENILYGKDDATLEDITRAAKLSEALSFINNLPERFETQVGERGVQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQEGKIVETGSHDELISNPDSVYASLVQFQETASLQRHPSIGQLGRPPSIKYSRELSRTTTSFGASFRSEKESLGRIGVDGMEMEKPKHVSAKRLYSMVGPDWMYGVVGVIGAFVTGSQMPLFALGVSQALVAFYMDWNTTQHEIKKISLLFCGGAVLTVIFHAVEHLCFGIMGERLTLRVREKMFHAMLRNEIGWFDDIDNTSAMLSSRLETDATLLRTIVVDRSTILLQNLALVVASFIIAFILNWRITLVVLATYPLIISGHISEKLFMQGYGGNLSKAYLKANTLAGEAVGNIRTVAAFCSEEKVLDLYAKELVEPSRRSLKRGQIAGIFYGVSQFFIFSSYGLALWYGSVLMGQGLASFKSIMKAFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRQTEVSGDVGEELNVVEGTIELKNVEFSYPSRPDVLIFKDFNLKVRSGKSIALVGQSGSGKSSVLALILRFYDPIAGRVMIDGRDIKKLKVKSLRKHIGLVQQEPALFATSIYENILYGKEGASEAEVFEAAKLANAHTFISALPEGYSTKVGERGIQLSGGQRQRIAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMKHRTTVVVAHRLSTIKNCDQISVIQDGKIVEQGTHSSLCENKNGAYYKLINIQQQQQRQ 1254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1666009 1674215 + CmoCh19G002370.1 Cmo19g00237 403397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00237 1254 SUPERFAMILY ABC transporter transmembrane region 40 346 IPR036640 GO:0005524|GO:0016021
Cmo19g00237 1254 PANTHER ABC TRANSPORTER B FAMILY MEMBER 2 33 1249 - -
Cmo19g00237 1254 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 370 614 IPR027417 -
Cmo19g00237 1254 Gene3D ABC transporter type 1, transmembrane domain 924 1252 IPR036640 GO:0005524|GO:0016021
Cmo19g00237 1254 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 376 612 IPR003439 GO:0005524
Cmo19g00237 1254 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 691 977 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cmo19g00237 1254 SUPERFAMILY ABC transporter transmembrane region 669 991 IPR036640 GO:0005524|GO:0016021
Cmo19g00237 1254 CDD ABC_MTABC3_MDL1_MDL2 1010 1245 - -
Cmo19g00237 1254 ProSitePatterns ABC transporters family signature. 1149 1163 IPR017871 GO:0005524
Cmo19g00237 1254 Gene3D ABC transporter type 1, transmembrane domain 101 851 IPR036640 GO:0005524|GO:0016021
Cmo19g00237 1254 CDD ABC_6TM_Pgp_ABCB1_D1_like 52 349 - -
Cmo19g00237 1254 ProSitePatterns ABC transporters family signature. 515 529 IPR017871 GO:0005524
Cmo19g00237 1254 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1004 1248 IPR027417 -
Cmo19g00237 1254 CDD ABC_6TM_Pgp_ABCB1_D2_like 680 995 - -
Cmo19g00237 1254 Pfam ABC transporter transmembrane region 57 324 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cmo19g00237 1254 Pfam ABC transporter transmembrane region 693 963 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cmo19g00237 1254 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1010 1246 IPR003439 GO:0005524
Cmo19g00237 1254 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 53 341 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cmo19g00237 1254 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 33 1249 IPR039421 -
Cmo19g00237 1254 SMART AAA_5 1037 1209 IPR003593 -
Cmo19g00237 1254 SMART AAA_5 403 595 IPR003593 -
Cmo19g00237 1254 Gene3D - 1000 1249 IPR027417 -
Cmo19g00237 1254 CDD ABC_MTABC3_MDL1_MDL2 376 614 - -
Cmo19g00237 1254 Pfam ABC transporter 1029 1177 IPR003439 GO:0005524
Cmo19g00237 1254 Pfam ABC transporter 395 543 IPR003439 GO:0005524
Cmo19g00237 1254 Gene3D - 374 627 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00092 Cmo-Chr9:438438 Cmo19g00237 Cmo-Chr19:1666009 1.46E-128 dispersed
Cmo11g00342 Cmo-Chr11:1685235 Cmo19g00237 Cmo-Chr19:1666009 3.01E-30 dispersed
Cmo15g00292 Cmo-Chr15:1372725 Cmo19g00237 Cmo-Chr19:1666009 7.20E-121 dispersed
Cmo18g00654 Cmo-Chr18:8236089 Cmo19g00237 Cmo-Chr19:1666009 3.68E-126 dispersed
Cmo19g00237 Cmo-Chr19:1666009 Cmo04g02890 Cmo-Chr4:20570027 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00237 K05658 - csv:101219304 2247.63