Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00243 ATGGATTATAGTGGGGGAAACGTGGTCCATGTGATCCCCGGGATGAGTAGCGAGAATTGGCCCGGTGAAGTTTGGGCTACCGAAGAAGAATACAGAGCTTGGAACAATGGCGGTGGTGATGGTTCCATTGATACGCCTTCTAATTCGAGTTATGATCAAAGACAATCCCAAAGCCGATCCGGAAGCGAACCCCCAAACAAGAAATCCAGAAGCTCACAGGATGTTACCTCTTCCAATCGATCAAAAGCGATTGGTAAAATGTTCTTCAAGACCAAACTCTGCTGCAAATTTCGTGCTGGAACCTGCCCTTACATCACGAACTGCAATTTCGCTCATAGCATTGAGGAGCTCCGGCGGCCACCACATAATTGGCAGCAGGAAATTGTGGCGGCACATGAAGAAGAGAAGGTATTTTCAGAGCCAAGGGAGGAATTTCAGATTCCTTCACTTGGGACATCAAATTTTGGTTCAGAGTCGCAGAGGTCATATAAAGGAAGACATTGCAAAAAGTTTTACACAGAGGAGGGCTGTCCATATGGGGATAGTTGTACGTTTCTTCATGATGAGCAGTCAAAGAATCGAGAGAGTGTGGCAATAAGCTTGGGACCTGGTGGCTACAGTGGCGGTGGTGGTGGCGGCGGCGGCGGTGGTGGTGGTTCAGGAAATGGATCCAACAGTAAGCCTTCGAATTGGAAAACAAGGATTTGTAACAAGTGGGAGTTGACAGGATATTGCCCATTTGGAAGCAAATGCCATTTTGCTCATGGAGCTGCTGAATTACACCGTTATGGTGGTGGGCTTATGGAGACAGAAACTAGAGACTCTTCATCAGCTCCTCCTGACCTGAAGCAGGGTGTATTGCCTAAAGCTCCTGGCGATACTCTGGTTGCTTCTGTTCCTTCACTACCTCATTCAGATGTTTATCATATTGTGGTTCCATCACAGAGGTCAACCATTGTAATTCAGAGGTCGGGTCAGCGAACTCATCAGAAATGGAAGGGCCCCGATAAAATCAGTCGGATATATGGTGACTGGATTGACGACATCGAATAA 1053 47.2 MDYSGGNVVHVIPGMSSENWPGEVWATEEEYRAWNNGGGDGSIDTPSNSSYDQRQSQSRSGSEPPNKKSRSSQDVTSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPHNWQQEIVAAHEEEKVFSEPREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYSGGGGGGGGGGGGSGNGSNSKPSNWKTRICNKWELTGYCPFGSKCHFAHGAAELHRYGGGLMETETRDSSSAPPDLKQGVLPKAPGDTLVASVPSLPHSDVYHIVVPSQRSTIVIQRSGQRTHQKWKGPDKISRIYGDWIDDIE 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1715049 1718045 + CmoCh19G002430.1 Cmo19g00243 403403

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00243 350 ProSiteProfiles Zinc finger C3H1-type profile. 88 115 IPR000571 GO:0046872
Cmo19g00243 350 SMART c3hfinal6 230 257 IPR000571 GO:0046872
Cmo19g00243 350 SMART c3hfinal6 162 189 IPR000571 GO:0046872
Cmo19g00243 350 SMART c3hfinal6 88 114 IPR000571 GO:0046872
Cmo19g00243 350 MobiDBLite consensus disorder prediction 198 229 - -
Cmo19g00243 350 MobiDBLite consensus disorder prediction 40 79 - -
Cmo19g00243 350 PANTHER CCCH ZINC FINGER/TIS11-RELATED 21 347 IPR045877 GO:0003729
Cmo19g00243 350 MobiDBLite consensus disorder prediction 31 79 - -
Cmo19g00243 350 MobiDBLite consensus disorder prediction 269 289 - -
Cmo19g00243 350 Gene3D - 152 202 - -
Cmo19g00243 350 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 231 256 IPR000571 GO:0046872
Cmo19g00243 350 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 89 113 IPR000571 GO:0046872
Cmo19g00243 350 SUPERFAMILY CCCH zinc finger 86 119 IPR036855 GO:0046872
Cmo19g00243 350 MobiDBLite consensus disorder prediction 139 158 - -
Cmo19g00243 350 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 21 347 - -
Cmo19g00243 350 ProSiteProfiles Zinc finger C3H1-type profile. 230 258 IPR000571 GO:0046872
Cmo19g00243 350 Gene3D - 83 119 - -
Cmo19g00243 350 Gene3D - 223 262 - -
Cmo19g00243 350 SUPERFAMILY CCCH zinc finger 161 190 IPR036855 GO:0046872
Cmo19g00243 350 SUPERFAMILY CCCH zinc finger 228 261 IPR036855 GO:0046872
Cmo19g00243 350 Pfam CCCH-type zinc finger 166 188 IPR041367 -
Cmo19g00243 350 ProSiteProfiles Zinc finger C3H1-type profile. 162 190 IPR000571 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00243 - - - cpep:111776464 682.174
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g01666 Cmo19g00243 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01325 Cmo-Chr5:10257732 Cmo19g00243 Cmo-Chr19:1715049 3.51E-51 dispersed
Cmo12g01251 Cmo-Chr12:11088182 Cmo19g00243 Cmo-Chr19:1715049 4.77E-49 dispersed
Cmo19g00243 Cmo-Chr19:1715049 Cmo14g00427 Cmo-Chr14:2028696 6.49E-10 dispersed
Cmo19g00243 Cmo-Chr19:1715049 Cmo02g01666 Cmo-Chr2:9571806 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g684 . . . . . . Bma07g00926 Bma14g00159 . . Cma02g01621 . Car02g01380 . . . Cpe05g00170 . . . . . . . . . . . . . . . . . . . . Chy04g00106 . Blo03g00868 Blo19g00195 . Bda09g00731 Bpe08g00827 Bpe11g00328 . . . Cmo02g01666 Cmo19g00243 . . . . . Cpe15g00204 Bhi05g00481 . . . . . . . . . . . . . . Csa03g04597 . Cme04g00130
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004224 1 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 4 2 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11604 PF00642 zf-CCCH 7.10E-11 CL0537 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00243 Cmo_Chr19 FPKM 0.248196 0.430588 0.133041 0.0 2.090422 1.795664 1.778889 0.0 0.0 0.0