Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo19g00245 | ATGAGTCTTGATGCTCTTTCTTCCAATGACTTCTTCAACTTCATCATCTACGACACCATCTCCGCAATCCCCAACACCTCCCCCGTCCTCCACGACTCGTCGGAGAACACATTTTTCTCCGACGACACGTGTTCGAGACATCAAGATCACCAACATGGGCTTGAAGGAAGCTTGAAACCCGATAGAAAACGCCGTCCGAGTGAGTTGGAAAGCCTCCGGACGGCGTCGACACGACAAGGGAAGAAGAAGAGGAAGAGAAAACCAAGGGTTTGTAAGAACAAAGAGGAAGCTGAAACACAAAGAATGACACACATTGCTGTTGAAAGGAACCGCCGCAAACAGATGAATGAGCATCTTTCAGTGTTACGTTCACTCATGCCCGAATCCTATGTTCAAAGGGGTGACCAAGCATCCATAGTAGGAGGAGCGGTTGAGTTTGTGAAGGAATTGGAGCATCTTCTATCAACTTTGGAAGCCAAGAAGCTGCAAGTTTTACAGAAAGAAGTTGATCATCAAGAACAAGAGATTAATGATAATAAGTTGTTTTCATTTGGAAGTTTGTTGATGAATAATTCAGATCATAATTATTGTTCCCAATACTCTACCAAATACACTTCCAAATCCAAGGCTTCTTCAGCTGATATTGAAGTTACTATGATTGAAACTCATGCAAACCTTAGAATCCTATCAACAAGAAGCCATAGACAGCTCTTGAAGCTCATTGCTGGTTTGCAGGCTCTTCGTCTCACCATTCTTCATCTAAGTCTTACTGATTTTCATCCATTGGTTCTTTACTCCATCAGCCTCAAGGTTGAAGAAGGATGCCAACTAAGATCAGTAGATGACATAGCAGCAGCAGCACATCATATGGTGAGAATAATTGAGGAAGAAACTATGTTATGTTAA | 906 | 42.38 | MSLDALSSNDFFNFIIYDTISAIPNTSPVLHDSSENTFFSDDTCSRHQDHQHGLEGSLKPDRKRRPSELESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRGDQASIVGGAVEFVKELEHLLSTLEAKKLQVLQKEVDHQEQEINDNKLFSFGSLLMNNSDHNYCSQYSTKYTSKSKASSADIEVTMIETHANLRILSTRSHRQLLKLIAGLQALRLTILHLSLTDFHPLVLYSISLKVEEGCQLRSVDDIAAAAHHMVRIIEEETMLC | 301 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 1723747 | 1726532 | + | CmoCh19G002450.1 | Cmo19g00245 | 403405 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo19g00245 | 301 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 98 | 165 | IPR036638 | GO:0046983 | |
Cmo19g00245 | 301 | Pfam | Helix-loop-helix DNA-binding domain | 100 | 151 | IPR011598 | GO:0046983 | |
Cmo19g00245 | 301 | PANTHER | TRANSCRIPTION FACTOR BHLH71 | 1 | 300 | - | - | |
Cmo19g00245 | 301 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 99 | 150 | IPR011598 | GO:0046983 | |
Cmo19g00245 | 301 | SMART | finulus | 105 | 156 | IPR011598 | GO:0046983 | |
Cmo19g00245 | 301 | PANTHER | MAX DIMERIZATION, MAD | 1 | 300 | - | - | |
Cmo19g00245 | 301 | Coils | Coil | 147 | 167 | - | - | |
Cmo19g00245 | 301 | MobiDBLite | consensus disorder prediction | 41 | 100 | - | - | |
Cmo19g00245 | 301 | MobiDBLite | consensus disorder prediction | 42 | 77 | - | - | |
Cmo19g00245 | 301 | Gene3D | - | 90 | 180 | IPR036638 | GO:0046983 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g01663 | Cmo19g00245 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo12g01101 | Cmo-Chr12:10070288 | Cmo19g00245 | Cmo-Chr19:1723747 | 4.62E-64 | dispersed | |
Cmo14g02236 | Cmo-Chr14:15865527 | Cmo19g00245 | Cmo-Chr19:1723747 | 6.35E-50 | dispersed | |
Cmo18g01328 | Cmo-Chr18:12635767 | Cmo19g00245 | Cmo-Chr19:1723747 | 2.15E-25 | transposed | |
Cmo19g00245 | Cmo-Chr19:1723747 | Cmo02g01663 | Cmo-Chr2:9566081 | 1.03E-141 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11605 | PF00010 | HLH | 1.00E-10 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo19g00245 | - | - | cmax:111466851 | 544.658 |