Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00245 ATGAGTCTTGATGCTCTTTCTTCCAATGACTTCTTCAACTTCATCATCTACGACACCATCTCCGCAATCCCCAACACCTCCCCCGTCCTCCACGACTCGTCGGAGAACACATTTTTCTCCGACGACACGTGTTCGAGACATCAAGATCACCAACATGGGCTTGAAGGAAGCTTGAAACCCGATAGAAAACGCCGTCCGAGTGAGTTGGAAAGCCTCCGGACGGCGTCGACACGACAAGGGAAGAAGAAGAGGAAGAGAAAACCAAGGGTTTGTAAGAACAAAGAGGAAGCTGAAACACAAAGAATGACACACATTGCTGTTGAAAGGAACCGCCGCAAACAGATGAATGAGCATCTTTCAGTGTTACGTTCACTCATGCCCGAATCCTATGTTCAAAGGGGTGACCAAGCATCCATAGTAGGAGGAGCGGTTGAGTTTGTGAAGGAATTGGAGCATCTTCTATCAACTTTGGAAGCCAAGAAGCTGCAAGTTTTACAGAAAGAAGTTGATCATCAAGAACAAGAGATTAATGATAATAAGTTGTTTTCATTTGGAAGTTTGTTGATGAATAATTCAGATCATAATTATTGTTCCCAATACTCTACCAAATACACTTCCAAATCCAAGGCTTCTTCAGCTGATATTGAAGTTACTATGATTGAAACTCATGCAAACCTTAGAATCCTATCAACAAGAAGCCATAGACAGCTCTTGAAGCTCATTGCTGGTTTGCAGGCTCTTCGTCTCACCATTCTTCATCTAAGTCTTACTGATTTTCATCCATTGGTTCTTTACTCCATCAGCCTCAAGGTTGAAGAAGGATGCCAACTAAGATCAGTAGATGACATAGCAGCAGCAGCACATCATATGGTGAGAATAATTGAGGAAGAAACTATGTTATGTTAA 906 42.38 MSLDALSSNDFFNFIIYDTISAIPNTSPVLHDSSENTFFSDDTCSRHQDHQHGLEGSLKPDRKRRPSELESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRGDQASIVGGAVEFVKELEHLLSTLEAKKLQVLQKEVDHQEQEINDNKLFSFGSLLMNNSDHNYCSQYSTKYTSKSKASSADIEVTMIETHANLRILSTRSHRQLLKLIAGLQALRLTILHLSLTDFHPLVLYSISLKVEEGCQLRSVDDIAAAAHHMVRIIEEETMLC 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1723747 1726532 + CmoCh19G002450.1 Cmo19g00245 403405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00245 301 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 98 165 IPR036638 GO:0046983
Cmo19g00245 301 Pfam Helix-loop-helix DNA-binding domain 100 151 IPR011598 GO:0046983
Cmo19g00245 301 PANTHER TRANSCRIPTION FACTOR BHLH71 1 300 - -
Cmo19g00245 301 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 99 150 IPR011598 GO:0046983
Cmo19g00245 301 SMART finulus 105 156 IPR011598 GO:0046983
Cmo19g00245 301 PANTHER MAX DIMERIZATION, MAD 1 300 - -
Cmo19g00245 301 Coils Coil 147 167 - -
Cmo19g00245 301 MobiDBLite consensus disorder prediction 41 100 - -
Cmo19g00245 301 MobiDBLite consensus disorder prediction 42 77 - -
Cmo19g00245 301 Gene3D - 90 180 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01663 Cmo19g00245 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g01101 Cmo-Chr12:10070288 Cmo19g00245 Cmo-Chr19:1723747 4.62E-64 dispersed
Cmo14g02236 Cmo-Chr14:15865527 Cmo19g00245 Cmo-Chr19:1723747 6.35E-50 dispersed
Cmo18g01328 Cmo-Chr18:12635767 Cmo19g00245 Cmo-Chr19:1723747 2.15E-25 transposed
Cmo19g00245 Cmo-Chr19:1723747 Cmo02g01663 Cmo-Chr2:9566081 1.03E-141 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11605 PF00010 HLH 1.00E-10 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00245 - - cmax:111466851 544.658