Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00246 ATGGGGTCTTATGGCAGCCCTAAGACTTGGATACCTTATATGAGCAACAAAGATTGCTCTCAAGGTTTTTGTAGTGTATATTGTCCTCAATGGTGCTACATCATGTTGTCACCTCCACCACCCTTGGAGTTTCCTGATGATGATTCATCCCCAAATTTTTCACCTCTTGTTATAGCAATTATTGGAATTCTAGCAAGTGCTTTCCTTCTTTTAAGCTATTACACCATCATTTCAAAGTATTGTGGCAACACAAATCGCTTGTTTGGAACTGGCAATCATGACCCAAATGAGGAATTTGAAGATAATCATAACCCAACACTTCATGAACCATGGCATGTTGCCACAAATGGCTTGGATGAGGCAATGGTTAAGTCCATTACGGTTTGCAAGTACGAGAGAGGAGATGGGTTGGTTGAAGGCTCTGATTGCTCTGTTTGTCTTAGTGAGTTTCAAGAAGATGATAGCCTTAGGTTGTTGCCTAAATGCAGCCATGCTTTTCATCTTCAATGTATTGATACTTGGCTCAAATCACACTCCAATTGCCCGTTATGTCGTGCTAATATCGTCTCTGTCGATGCTTCTCCTCCCGTTCACCTTCCTGCAAGCAATGCATATCCCATAACTAATGAGACCATGCCAGAGACTTCTCAGACACATGACCCTGAGGCTGTTTCACAAGATTCAGAACGAAGTTTGAGAAGTGATTGTGGGAAGAACTCGGTTCGTGCCTTCAGTGACCTCGGAGTACCAGAGAAAAGAGACACTGTCATTGAGCTTAGAGACGGCGAATTGCAGCAAATTAGAAGGTCCATTTCAATGGATCATTGCAGCCAAAATCATATCATTATTGCGGATGTTCTACGTCTAAACGACGATGAGTATGAAGCAGGAAGTTCAGGTGATGTTGGATCATCCAAATGTTCAGTGGGAGAAGACAGCAAGTCCAGCCACAGAAAAACAATCCTGCATTGTGTTATGAGTCCTGTTTCGATTAAGAGATCGTTTTCAAGTGGAAGATTTTCTCTCATTAGGCATGGAAAAGAACAAAGAGAAATCGCCCGTGTCTGA 1068 42.42 MGSYGSPKTWIPYMSNKDCSQGFCSVYCPQWCYIMLSPPPPLEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHDPNEEFEDNHNPTLHEPWHVATNGLDEAMVKSITVCKYERGDGLVEGSDCSVCLSEFQEDDSLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMPETSQTHDPEAVSQDSERSLRSDCGKNSVRAFSDLGVPEKRDTVIELRDGELQQIRRSISMDHCSQNHIIIADVLRLNDDEYEAGSSGDVGSSKCSVGEDSKSSHRKTILHCVMSPVSIKRSFSSGRFSLIRHGKEQREIARV 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1728060 1729127 - CmoCh19G002460.1 Cmo19g00246 403406

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00246 355 MobiDBLite consensus disorder prediction 208 222 - -
Cmo19g00246 355 PANTHER E3 UBIQUITIN-PROTEIN LIGASE OS04G0590900-LIKE 6 345 - -
Cmo19g00246 355 CDD RING-H2_PA-TM-RING 142 185 - -
Cmo19g00246 355 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 6 345 IPR044675 -
Cmo19g00246 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 193 IPR013083 -
Cmo19g00246 355 SUPERFAMILY RING/U-box 133 193 - -
Cmo19g00246 355 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Cmo19g00246 355 MobiDBLite consensus disorder prediction 208 236 - -
Cmo19g00246 355 Pfam Ring finger domain 142 185 IPR001841 -
Cmo19g00246 355 SMART ring_2 143 184 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00246 - - - cmo:103503554 622.468
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g01662 Cmo19g00246 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01797 Cmo-Chr2:10206595 Cmo19g00246 Cmo-Chr19:1728060 2.69E-34 dispersed
Cmo03g00868 Cmo-Chr3:6774014 Cmo19g00246 Cmo-Chr19:1728060 1.89E-48 dispersed
Cmo05g00542 Cmo-Chr5:2619017 Cmo19g00246 Cmo-Chr19:1728060 3.03E-47 dispersed
Cmo06g01226 Cmo-Chr6:9301916 Cmo19g00246 Cmo-Chr19:1728060 4.78E-89 dispersed
Cmo08g00982 Cmo-Chr8:6392551 Cmo19g00246 Cmo-Chr19:1728060 1.27E-76 dispersed
Cmo14g01978 Cmo-Chr14:14563522 Cmo19g00246 Cmo-Chr19:1728060 1.44E-83 dispersed
Cmo17g00076 Cmo-Chr17:400573 Cmo19g00246 Cmo-Chr19:1728060 3.34E-70 dispersed
Cmo20g00883 Cmo-Chr20:4456060 Cmo19g00246 Cmo-Chr19:1728060 3.28E-24 dispersed
Cmo20g00470 Cmo-Chr20:2168024 Cmo19g00246 Cmo-Chr19:1728060 4.09E-25 transposed
Cmo11g01477 Cmo-Chr11:10443138 Cmo19g00246 Cmo-Chr19:1728060 2.02E-48 wgd
Cmo19g00246 Cmo-Chr19:1728060 Cmo02g01662 Cmo-Chr2:9563701 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g679 . . . . . . . Bma14g00158 . . Cma02g01617 . Car02g01377 . . . Cpe05g00173 . . . . . . . . . . . . . . . . . . . . Chy04g00102 . . . Bda07g00092 . . Bpe11g00330 . . Sed02g1537 Cmo02g01662 Cmo19g00246 . . . . . Cpe15g00207 Bhi05g00484 Tan07g1986 Cmetu04g2051 Lac11g2423 Hepe06g1781 . Lcy12g1954 . . . . . . . . Csa03g04600 . Cme04g00127
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001850 2 2 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 1 2 4 2 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00246 Cmo_Chr19 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0