Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00251 ATGACTGACTACCGACTGCCGCAGGCGATGAATCTCTGGGCGGATGAGAACGCGTCGATGATGGACGTGTTCACAAGCACCGATCTGAGTTCCTTATGGGTTACGCCGCCGCTGCCTCAGCCACAGCCACAGCCGCAGCCGCAGCCGCTTTATTCCTCTGTTTCCACGGCGATTGAACCAAGTAAACCCGTCGGTCAAGAGCCGCCGCCGCCGCCATCCTTGGCGGTTTTCAACCAGGAGACTCTGATGCAGCGCCTCCAAGTGTTGATTGAAGGCGCTCAAGAGAGCTGGACTTACGCTATCTTCTGGCAATCTTCGTACTACTCCGGTGGTAACCTCTTAGGGTGGGGCGATGGATACTACAAAGGCGAAGAAGATAAAGAGAAGGCTAAATCGAGCACCTCAAAAACAGAGCAAGAGCGCCGGAAGACGGTACTTCGCGAACTCAACTCTCTCATTTCTGGTTCCCCTGCCTCCGATGACGACGCCGTCGACGAGGTCGTCACCGACACCGAATGGTTCTTCTTGGTGTCGATGACTCAATCGTTCGTCTCTGGTGTCGGATTACCGGGACAAGCGTTTTTAGATTCGAACCCTATTTGGATTAGCGGTTCCGATCGGCTTGCGAGCTCGTTCTGTGAACGAGCTCGTCAGGGTCAGATTTTCGGATTGCAAACAATGGTTTGTATTCCGTTGGTGAACGGAGTGGTTGAATTAGGGTCGAGCGATTTGATTTTCCTGAACTCTGATCTGATGAATAGGGTTAGGGTTTTGTTTAATTTCAATAATCTGGAGGCGGAGACTTGGCCAATTAGTGGCGAGAATGACCCGTCGCTTTGGATCACTGAGCCATTATCAAACACCATTGAAATTAAGGACGCCATTGAAACTCCAAGTTCTTCTGTTCCTCCTCCGCCTCAAAAGAGTAACCGGCAGCCGCAGCCGGTTCAGAAACAGAGCTTCTTAACCCCCAAGGAATTGAACTTCTCTGAATTTGGGTTTGAGAATGGCAGCTTGAAGGCGGAATCCGGGGAGATTCTTAATTTTAGTGGCACCAAGAAGAATTCTCACCCCAAAACAGACAACATCTTGCCTTCTGGCAACCCGGGCGGCGGCGATGAGAACAAGAAGAAGACATCCAGTAACGAAGAGGGGATGCTTTCTTTTACATCTGGTGTGATTCTTCCATCCTCTGGCACCGCGAAATCAACCGGTTGCATTGTCGATTCCGACCACTCCGACCTCGAAGCATCGGTGATACGTGAGGTGGAGAGTAATAGAGCGGTGGAGCCGGAGAAACGGCCGCGAAAACGAGGTCGAAAACCAGCAAATGGTAGAGAAGAACCATTGAATCATGTTGAAGCAGAGAGGCAGAGAAGAGAAAAACTAAACCAAAGATTCTACGCTCTTAGAGCTGTGGTTCCAAATGTATCAAAAATGGACAAAGCTTCACTTCTTGGCGATGCTATTTCTTACATTAATGAGCTCAAAGGGAAGCTTCAAACTGCAGAATCAGATAAGGAGGAGCTACAAAAGCAATTGGATTCAGTGAAGAAGTTCATATCAAGCTCAGATCAAGACGTAAAAGCGTCAAATTATGGCATCGAAACCGATATCGACGTGAAGATAATCAGCTGGGACGCGATGATCCGGATCCAATCTAGTAAGAAGAACCATCCCGCTGCACGGCTGATGGCGGCATTGGAGGAACTTGATTTGGATATCAGCCATGCGAGCATTTCAGTTGTGAATGATTTGATGATCCAACAAGCAACTGTGAAGATGGGCAGTCGGTTGTACACTCAGGAGCAGCTCAGGATAGCTCTGTCGTCGAAAATGGCCGCCGCTCGGTAG 1854 49.51 MTDYRLPQAMNLWADENASMMDVFTSTDLSSLWVTPPLPQPQPQPQPQPLYSSVSTAIEPSKPVGQEPPPPPSLAVFNQETLMQRLQVLIEGAQESWTYAIFWQSSYYSGGNLLGWGDGYYKGEEDKEKAKSSTSKTEQERRKTVLRELNSLISGSPASDDDAVDEVVTDTEWFFLVSMTQSFVSGVGLPGQAFLDSNPIWISGSDRLASSFCERARQGQIFGLQTMVCIPLVNGVVELGSSDLIFLNSDLMNRVRVLFNFNNLEAETWPISGENDPSLWITEPLSNTIEIKDAIETPSSSVPPPPQKSNRQPQPVQKQSFLTPKELNFSEFGFENGSLKAESGEILNFSGTKKNSHPKTDNILPSGNPGGGDENKKKTSSNEEGMLSFTSGVILPSSGTAKSTGCIVDSDHSDLEASVIREVESNRAVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKGKLQTAESDKEELQKQLDSVKKFISSSDQDVKASNYGIETDIDVKIISWDAMIRIQSSKKNHPAARLMAALEELDLDISHASISVVNDLMIQQATVKMGSRLYTQEQLRIALSSKMAAAR 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1832010 1833863 + CmoCh19G002510.1 Cmo19g00251 403411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00251 617 PANTHER TRANSCRIPTION FACTOR MYC2 13 615 - -
Cmo19g00251 617 PANTHER MYC 13 615 IPR045084 GO:0003700|GO:0006355
Cmo19g00251 617 SMART finulus 453 502 IPR011598 GO:0046983
Cmo19g00251 617 MobiDBLite consensus disorder prediction 418 457 - -
Cmo19g00251 617 Pfam Helix-loop-helix DNA-binding domain 451 496 IPR011598 GO:0046983
Cmo19g00251 617 MobiDBLite consensus disorder prediction 349 384 - -
Cmo19g00251 617 Gene3D - 446 524 IPR036638 GO:0046983
Cmo19g00251 617 CDD bHLH_AtAIB_like 444 519 - -
Cmo19g00251 617 Coils Coil 493 520 - -
Cmo19g00251 617 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 447 496 IPR011598 GO:0046983
Cmo19g00251 617 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 82 259 IPR025610 -
Cmo19g00251 617 MobiDBLite consensus disorder prediction 349 363 - -
Cmo19g00251 617 MobiDBLite consensus disorder prediction 296 322 - -
Cmo19g00251 617 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 450 523 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo16g01208 Cmo19g00251 CCT
Cmo06g00657 Cmo19g00251 CCT
Cmo02g01657 Cmo19g00251 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g01278 Cmo-Chr16:9130029 Cmo19g00251 Cmo-Chr19:1832010 9.69E-17 dispersed
Cmo19g00079 Cmo-Chr19:435281 Cmo19g00251 Cmo-Chr19:1832010 8.74E-14 dispersed
Cmo16g01208 Cmo-Chr16:8631197 Cmo19g00251 Cmo-Chr19:1832010 0 wgd
Cmo19g00251 Cmo-Chr19:1832010 Cmo02g01657 Cmo-Chr2:9546095 0 wgd
Cmo19g00251 Cmo-Chr19:1832010 Cmo06g00657 Cmo-Chr6:3318070 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11607 PF14215 bHLH-MYC_N 2.80E-51 CL0161 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00251 K13422 - csv:101218165 882.478