Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00256 ATGGATTCACGTGATACTCCACCTCCACCACTTTCTGCACCGTCCAACATGGCGATCGGAGGACCGTCGGCGTATTCAACCGCCATGACCAATGCCAACAACAATGCCTCTTCCAATATGGCTCTCTTTCCGCCTACCTCTCAGATGATGCCTCCTTCTGCGCGATTTCCGTTCAAGTCTGTGATCTCCCCTGCATCCCTGCATTTGGATTCTATGAACGCTTCTCCTTACGACGGAACGCATTCCGGAAATTTCAATGTCGATTCCGGAAAGAAAAGGAGGGGCCGGCCGAGGAAGTACGATCCTGATGGTAATATCATCGCCTTGGGTTTGGCACCTACCACTGTTGTTACCTCTTCTGTTGTGCACGGGGATTTGAGCGCTACTCCTGATTTGGAGCAGCCGGTCAGGAAACCGAGGGGAAGGCCGCGGGGCTCTGGAAAGAAACAGACGAATGCTCTTGGTTCAAGCGGCACTAGTTTTACTCCTTACGCCGTATTGGCGAAGCCTGGAGAGGATGTAGTAGCCAAAATTTTGTCATACTCACAGCAAGGAACACGAACTGCCTTTATTCTCTCTGCAAATGGTACCATCAGTAATGCTACCCTTAGACACTCGGCATCGTCTGGTGGTTCTGTGACATATAAGGGCCAGTTTGAGATCATCTCTCTGTCAGGCCCCATTTTGCCCTTGGAGAACAATGAAACTGGAAGTAGAACAGGTGGTTTGAATGTGCTCCTGGCTGGGTCAGATGGACAGGTTCTTGGTGGTGGTGTTGCAGGAATGCTCATGGCAGGTTCTCAAGTACAGGTGATTGTGGGAAATTTTCTGGAGGATGATAAAAATTTCAACACCACAAGTATGCTGAATTCTGGATCGTCTTCTGCCCCATTACAAATGATGAACTTTGGTGGTGGTGGTGGTGGTGGTGATGCAGCATCGTCGTCATCAGCAGTAGCAGCAGCAGCAGCAGCCAGCCCTCGGTCGTTAGGGGCATCGAGCGGGGAGTCGTCTGCTGAAAATGGAGAGAGCCCTCTTAATAATAGGCATCCTGGAATGTTCAATAATAATAATAATAATACCAGCCAGCCGATGCACAATAATAATCAGATGTACCACCAATTATGGTCAGGCCAAACGCAGCAGTGA 1149 49.61 MDSRDTPPPPLSAPSNMAIGGPSAYSTAMTNANNNASSNMALFPPTSQMMPPSARFPFKSVISPASLHLDSMNASPYDGTHSGNFNVDSGKKRRGRPRKYDPDGNIIALGLAPTTVVTSSVVHGDLSATPDLEQPVRKPRGRPRGSGKKQTNALGSSGTSFTPYAVLAKPGEDVVAKILSYSQQGTRTAFILSANGTISNATLRHSASSGGSVTYKGQFEIISLSGPILPLENNETGSRTGGLNVLLAGSDGQVLGGGVAGMLMAGSQVQVIVGNFLEDDKNFNTTSMLNSGSSSAPLQMMNFGGGGGGGDAASSSSAVAAAAAASPRSLGASSGESSAENGESPLNNRHPGMFNNNNNNTSQPMHNNNQMYHQLWSGQTQQ 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1864916 1869691 + CmoCh19G002560.1 Cmo19g00256 403416

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00256 382 MobiDBLite consensus disorder prediction 328 368 - -
Cmo19g00256 382 CDD DUF296 162 276 IPR005175 -
Cmo19g00256 382 MobiDBLite consensus disorder prediction 330 368 - -
Cmo19g00256 382 Pfam Plants and Prokaryotes Conserved (PCC) domain 163 276 IPR005175 -
Cmo19g00256 382 MobiDBLite consensus disorder prediction 1 23 - -
Cmo19g00256 382 SUPERFAMILY AF0104/ALDC/Ptd012-like 159 278 - -
Cmo19g00256 382 MobiDBLite consensus disorder prediction 126 157 - -
Cmo19g00256 382 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 46 344 IPR039605 GO:0003680
Cmo19g00256 382 MobiDBLite consensus disorder prediction 87 101 - -
Cmo19g00256 382 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 46 344 - -
Cmo19g00256 382 ProSiteProfiles PPC domain profile profile. 158 299 IPR005175 -
Cmo19g00256 382 Gene3D - 164 290 - -
Cmo19g00256 382 MobiDBLite consensus disorder prediction 73 101 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00256 - - - cmos:111463805 650.203
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo16g01203 Cmo19g00256 CCT
Cmo06g00662 Cmo19g00256 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00256 Cmo-Chr19:1864916 Cmo01g02098 Cmo-Chr1:14534772 1.03E-58 dispersed
Cmo16g01203 Cmo-Chr16:8608087 Cmo19g00256 Cmo-Chr19:1864916 1.96E-86 wgd
Cmo19g00256 Cmo-Chr19:1864916 Cmo02g01652 Cmo-Chr2:9527908 2.96E-178 wgd
Cmo19g00256 Cmo-Chr19:1864916 Cmo06g00662 Cmo-Chr6:3334907 2.99E-88 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g637 . . . . . . Bma07g00961 . Cmo06g00662 Cmo16g01203 . . . . . Cpe14g00855 . Bhi11g00147 . . . Hepe06g1765 Mch10g1643 . . . . . . . . . . . . . . Chy04g00085 . Blo03g00838 Blo19g00178 . . . . . . . . Cmo19g00256 Cma06g00655 Cma16g01152 Car06g00584 Car16g01092 . Cpe15g00219 . . . . . . . . . . . . . . . . Chy06g02136 Cme04g00108
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012965 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 0 1 2 1 0 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00256 Cmo_Chr19 FPKM 71.68956 74.615784 117.499908 112.711502 109.900841 120.707031 111.537506 109.198326 107.638802 91.762436