Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00257 ATGGCTGGCCTGGATTTAAGCAATCACTATATTCACCAACTTCAAAGGCCTGATTTCAACCACCACCAACACCACCACCACCACCAGCCGCCGCCGCCTCCTCCACCCGATTCTCAATCGTGTCATGACACCGAATCTCATCATCTCGCCACCGATACGGTGGCGTCTCGCCGACCACGCGGTCGTCCACCCGGTTCCAAAAACAAACCAAAGCCACCAGTCATCATAACTCGAGAAAGCGCAAATACCCTAAGAGCTCATATTCTCGAGATCGGCGGTGGCTGCGACGTCTTTGATAGCATCGCTTCCTACGCTCGCCGCCGTCAGCGTGGGATCTGCATCTTGAGTGGCAGCGGAATGGTAACGAATGTCAACTTACGACAACCGACCGCGGCGGGATCTGTGTTAACCCTACAAGGTAGGTTTGAGATATTATCGCTCACTGGATCTTTCTTACCGCCACCGGCTCCTCCCGGCACCACCAGTTTGACCATATACTTGGCTGGTGGGCAAGGGCAAGTGGTCGGTGGTAACGTTGTCGGAGAATTGATGGCAGCCGGGCCAGTGACGGTGATCACCGCTTCGTTTACGAATGTAGCATATGAGAGATTGCCACTGGAAGACGAAGAACAAGAACAAGAACAAGAACAAGATCAGGTTCAGATGCAACCACCGACATCGCACGGAAACAATAACCCATTTCCAGATCCATCTTCAGGGCTTCAGTTCTTCAATTTGCCTGTAAATATGCAGAATCAAATTCAGCTACCATTCTGA 777 51.74 MAGLDLSNHYIHQLQRPDFNHHQHHHHHQPPPPPPPDSQSCHDTESHHLATDTVASRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEIGGGCDVFDSIASYARRRQRGICILSGSGMVTNVNLRQPTAAGSVLTLQGRFEILSLTGSFLPPPAPPGTTSLTIYLAGGQGQVVGGNVVGELMAAGPVTVITASFTNVAYERLPLEDEEQEQEQEQDQVQMQPPTSHGNNNPFPDPSSGLQFFNLPVNMQNQIQLPF 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1873601 1874377 - CmoCh19G002570.1 Cmo19g00257 403417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00257 258 PIRSF ESCAROLA 4 256 IPR014476 GO:0003680
Cmo19g00257 258 Pfam Plants and Prokaryotes Conserved (PCC) domain 85 198 IPR005175 -
Cmo19g00257 258 MobiDBLite consensus disorder prediction 41 55 - -
Cmo19g00257 258 CDD DUF296 85 168 IPR005175 -
Cmo19g00257 258 Gene3D - 84 218 - -
Cmo19g00257 258 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 257 IPR014476 GO:0003680
Cmo19g00257 258 MobiDBLite consensus disorder prediction 20 75 - -
Cmo19g00257 258 SUPERFAMILY AF0104/ALDC/Ptd012-like 81 210 - -
Cmo19g00257 258 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 257 - -
Cmo19g00257 258 ProSiteProfiles PPC domain profile profile. 81 219 IPR005175 -
Cmo19g00257 258 MobiDBLite consensus disorder prediction 207 242 - -
Cmo19g00257 258 MobiDBLite consensus disorder prediction 217 242 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo16g01202 Cmo19g00257 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00948 Cmo-Chr8:6171397 Cmo19g00257 Cmo-Chr19:1873601 6.34E-90 dispersed
Cmo14g02016 Cmo-Chr14:14758803 Cmo19g00257 Cmo-Chr19:1873601 3.96E-88 dispersed
Cmo17g00057 Cmo-Chr17:290693 Cmo19g00257 Cmo-Chr19:1873601 7.41E-88 dispersed
Cmo19g00257 Cmo-Chr19:1873601 Cmo06g01345 Cmo-Chr6:9973532 2.02E-66 dispersed
Cmo16g01202 Cmo-Chr16:8602724 Cmo19g00257 Cmo-Chr19:1873601 1.20E-91 wgd
Cmo19g00257 Cmo-Chr19:1873601 Cmo02g01651 Cmo-Chr2:9524324 2.20E-117 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00257 - - cmo:103503535 358.221