Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00258 ATGGCTACTAAGCTTGAGCTTGGATTCCAACACGATCCTTCTTTGCCTGAAACGGTTCGTGACGGGTGGAATCTTAACGGTTTAAACCCTATGCAAACTCCCGACGTCGTTACAGATGCCGATGACGATGACTCGTGGGAAGTCAGAGCTTTCGCCGAGGACACTCGTAATGTTATGGGAACTACTTGGCCTCCTAGGTCATATACTTGCACTTATTGTAGACGAGAGTTCAAATCAGCTCAAGCCCTAGGAGGTCATATGAATGTTCACCGCCGCGACCGTGCTCGCCTCCATCAAGCTCCTCTGTCGAATACAACGAAACCCTCTTCGTCATCTTCCTCGATTTCCAATTCTTTCATCATCCCACCTCCTGATTTTAATGGTGGAGGCTTGTGCCTTCTCTACCAATTCCCAAACCCTAATAGTGTTAATGGTGGGATCAATATCCCTTCTCTTTTCTCCGTGTCCAATCATTCCTTCAATAGCTTTTTGCCCTCCATGGCGATGTCTCGGGGTTTTCCAGTGAACGACCACCGTCTCAGAGGGCTCGGAGAGAGTAATTTCTCTCGATCTGAACAACAGTTCTCGACGTCCATGGAAAATGGAAACCAAGAACTTGATCTAGAGCTCAGGCTTGGACACGGTCCAGATTCGACTCGAACTCACATCGAAAATGGACAGAAGATCTCTAAGAGATCATCAGATTGA 708 47.46 MATKLELGFQHDPSLPETVRDGWNLNGLNPMQTPDVVTDADDDDSWEVRAFAEDTRNVMGTTWPPRSYTCTYCRREFKSAQALGGHMNVHRRDRARLHQAPLSNTTKPSSSSSSISNSFIIPPPDFNGGGLCLLYQFPNPNSVNGGINIPSLFSVSNHSFNSFLPSMAMSRGFPVNDHRLRGLGESNFSRSEQQFSTSMENGNQELDLELRLGHGPDSTRTHIENGQKISKRSSD 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1886284 1886991 + CmoCh19G002580.1 Cmo19g00258 403418

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00258 235 Gene3D Classic Zinc Finger 58 118 - -
Cmo19g00258 235 PANTHER OS07G0101800 PROTEIN 33 214 - -
Cmo19g00258 235 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 95 IPR013087 -
Cmo19g00258 235 MobiDBLite consensus disorder prediction 210 235 - -
Cmo19g00258 235 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Cmo19g00258 235 SMART c2h2final6 68 90 IPR013087 -
Cmo19g00258 235 PANTHER OS07G0101800 PROTEIN 33 214 - -
Cmo19g00258 235 SUPERFAMILY beta-beta-alpha zinc fingers 65 95 IPR036236 -
Cmo19g00258 235 Pfam C2H2-type zinc finger 68 92 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00258 - - - cmo:103503534 285.034
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00424 Cmo-Chr3:4925961 Cmo19g00258 Cmo-Chr19:1886284 1.00E-22 dispersed
Cmo06g00876 Cmo-Chr6:4987437 Cmo19g00258 Cmo-Chr19:1886284 1.05E-35 dispersed
Cmo07g01053 Cmo-Chr7:5358277 Cmo19g00258 Cmo-Chr19:1886284 8.24E-20 dispersed
Cmo14g00118 Cmo-Chr14:529508 Cmo19g00258 Cmo-Chr19:1886284 1.18E-23 dispersed
Cmo14g01827 Cmo-Chr14:13912429 Cmo19g00258 Cmo-Chr19:1886284 1.37E-19 dispersed
Cmo19g00084 Cmo-Chr19:468370 Cmo19g00258 Cmo-Chr19:1886284 2.19E-16 dispersed
Cmo19g00258 Cmo-Chr19:1886284 Cmo02g01650 Cmo-Chr2:9518170 4.62E-81 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g595 . . . . . . . Bma14g00091 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo19g00258 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013309 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 0 1 1 1 0 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11608 PF13912 zf-C2H2_6 3.30E-07 CL0361 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00258 Cmo_Chr19 FPKM 2.120851 2.031646 7.854785 7.540388 18.368744 15.091044 18.922983 163.104004 161.447525 161.643631