Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00274 ATGGCGGACCGTGGATCTTACGGCTTGGCTCCTCGTCTAGATATTGACCAGTTATTGATAGAAGCAAAACATCGTTGGTTACGTCCAGCTGAAATTTGTGAAATACTCCGTAACTATCCTAAGTTTCAAATTGCTTCAGAGCCTCCAGATAGACCTTCAAGTGGGTCACTTTTTCTCTTTGATCGAAAGGTTCTGAGGTACTTTAGAAAGGATGGACATAAATGGAGGAAGAAGAAAGATGGCAAAACAGTAAGAGAAGCACATGAGAAGCTGAAGGTTGGAAGCATTGATGTATTGCACTGCTATTATGCCCATGGAGAAGAAAATGAGAACTTTCAAAGGCGCAGTTATTGGATGCTTGAAGAGCATTTAATGCACATCGTTTTTGTCCACTACTTGGAAGTTAAGGGTAATAGAACCAATATTGGAGCTGTCGTTGAGACTGATGAGGTTTCATCAAGTTCACAGAAGAGCAGCCCTACGAGTGCTAGCTATTCCAGCAGTTATAATCAAGCAGCTTCTGAAAATGCAGATTCCCCCAGTCCAACTAGCCCTTTGACACCATTTTGTGAAGATTGTGATACGGAAGACACCGGCCAAGCAACTTCAAGATTTCGCTCATTTCCCACATCACCAAAAATGGGAAATGGTCTTCTGATGAATAAACAAGATGCTGGTCAATCAAATTTTTATTTTCCGCATTCTTCTTCCAACACATCAGTTCCTGCTGTGGATTATGTATCACAAGTTCAGAAAGATGTACTTGGGGGTAACATTTGTGGTACCAATGTGACGGATTCTCAGAAGACGCTCAGTTCTGCCTCGTGGGAAGAGATCTTGCAACATTGTACAACTGGATTTCAGGCTGTACCTTCTCATGTTTTATCCTCTTTGATTGAACCTGTTTCTTCTGGAATTGTCGTTGGACAAGAGAATTCAATTCCTGGCAAGCCTTCAACCAGTAATAGTGCTATTACAGAGGATTTTGGGAGTTCTCTGACAATGAACCCAAACTGGCAGGTTTCTTTTGAAGACAATACTTCGTCCTTTTCAAAAGAGTACGTTGACCAGTTTCCAGAATTGTATTCAGTTTATGACATAGATAGCAGGTTAACTGAGCAGAAATCTCATAATGCAACTTTTGGAAGTGGTCATGAGATGTCTTGTGCTCATCCTGGCATAGAGAATGAGGAGATTTTGCCAAACAACCTTGAATTACAGTTCAAAGAAGGAGAATCGTATTCTGCTATGAGGTTGAGTTCTGAAAATGATACATCTAAAGAAGGTACCGTTGGCTATTCTTTGAGTTTGAAACAATCATTAATAGACGGAGAGGAGAGTTTAAAGAAAGTTGACAGCTTCTCGAGGTGGGTATCCAGAGAGCTTGTCGAAGTTGATGATTTGCACATGCATCCATCATCTGGCTTGTCTTGGAGCACCGTAGAATGTGGTGATATGGTAGATAATTCATCATTAAGCCCTTCTCTTTCTGAAGACCAGCTTTTCAGTATAATAGAATTTTCTCCAAAGTGGACACTTGCAGATTTGGAAACTGAGGTTGTGATTATAGGAAAGTTTCTGGGGAACAATCATGGCACAAAATGTTATTGGTCATGTATGTTTGGGGAAGTCGAAGTTCCTGCAGAGGTTTTGGCTGATGGGATTCTATGCTGCCATGCACCACCACATAGTGTTGGGCAAGTCCCTTTTTATGTCACATGTTCCAACAGATTAGCATGCAGTGAGATTCGTGAGTTTGATTACTTGGCAGGCTCTGCTCAAGATGTTGATGTTACCGAAGTATATACTGCTGGTGCTACAGAGGAATTATATTTGCATATGCGATTGGAGAGGTTACTGTCCCATAGATCTTCAAATCCTCCAAATAATCTCTCTGAAGGTGCTTTGGAGAAACGGAACTTAATCAGAGAGCTTATCTCAATAAAAGAAGAAGAAGATTGTTATGGGGAAGAGCCAAATTCTCTTAATGTTCAAATTCAGCATCAAAACAAGGAGTTTCTTTTTGTAAAGCTGATGAAAGAAAAAGTGTACTCGTGGCTTATCCGCAAAGTCATTGAAGGTGGCAAAGGTCCTCATATATTGGATGATGAGGGACAGGGGTTAATTCATTTAGCAGCAGCCCTTGGTTATGATTGGGCAATCCGACCAATTGTCGCTGCAGGAGTGAGCATAAACTTCCGAGACATTAACGGATGGACTGCTCTCCATTGGGCAGCATTCTGTGGCAGGGAGTTGACAGTTGGAACCCTTATAACATTGAATGCTGCTCCTGGATTGCTGGCTGATCCTTCTCCAGAAAATCCTTTGGGGATACCGCCATCTGAACTTGCGTCGATGAATGGGCACAAAGGGATTGCTGGTTTCCTTGCAGAGTCATCATTGACCAGCTATATCGAATCCATATCAATGGGGGAGACCGTAAAAGATGGTGTGCTGGACGTTTCAAAGAGGAAACCTGTGCATACTGTTTCTGAACGAAGGGCAACACCGATAAGTGATGGTTTTATGCCTGCTGATTTGTCCTTGAAGGATTCATTGACTGCTGTCTGCAATGCTACTCAAGCTGCTGGGCGTATACATCTGATGTTTAGAATGCAGTCATTTCAGAGGAAAAAATTATCGGAGTGTAGTCCTGATGAACTTGGATCCTCAGATGATACTGCTATTTCATTTGCCAAAGCCAGGGCACGTAAGTCTGGACTAAGTAACAGCCCGGCCCATGCCGCTGCAGTTCACATACAGAAAAAGTTCCGTGGTTGGAGAATGAGAAAAGAGTTCTTGCTAATACGTCAAAGAATAGTGAAAATTCAGGCCCACGTGAGAGGACACCAGGTGAGGAAGCAATATAAAAAGATCGTCTGGTCGGTAGGCATATTAGACAAGATCATTTTGAGATGGAGACGGAAGGGGAGTGGTTTGCGAGGTTTCCGATCAGATGCAGCTGCAAAGAATCCATCCGCTGTGTTGGAACCGCCTAAAGAGGATGATTATGATTTTCTGGCGAAAGGAAGGAGGCAGACTGAGGAGAGATTTCAAAAAGCACTGACTAGAGTCAAGTCCATGGCTCAGTATCCCGAGGGACGAGACCAATACCGTAGGCTTCTTACCGTCGTTCAAAAGTGCCAAGAAACTAAGGCAAGTAATATGGCTATTACTAGCACTAGAGAAGAGATAATAGAAGGCGATGACATGATTGATATCGACTCACTTCTGGACGACGACGCTTTAATGTCTATGACATTTGATTGA 3270 42.57 MADRGSYGLAPRLDIDQLLIEAKHRWLRPAEICEILRNYPKFQIASEPPDRPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVREAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEHLMHIVFVHYLEVKGNRTNIGAVVETDEVSSSSQKSSPTSASYSSSYNQAASENADSPSPTSPLTPFCEDCDTEDTGQATSRFRSFPTSPKMGNGLLMNKQDAGQSNFYFPHSSSNTSVPAVDYVSQVQKDVLGGNICGTNVTDSQKTLSSASWEEILQHCTTGFQAVPSHVLSSLIEPVSSGIVVGQENSIPGKPSTSNSAITEDFGSSLTMNPNWQVSFEDNTSSFSKEYVDQFPELYSVYDIDSRLTEQKSHNATFGSGHEMSCAHPGIENEEILPNNLELQFKEGESYSAMRLSSENDTSKEGTVGYSLSLKQSLIDGEESLKKVDSFSRWVSRELVEVDDLHMHPSSGLSWSTVECGDMVDNSSLSPSLSEDQLFSIIEFSPKWTLADLETEVVIIGKFLGNNHGTKCYWSCMFGEVEVPAEVLADGILCCHAPPHSVGQVPFYVTCSNRLACSEIREFDYLAGSAQDVDVTEVYTAGATEELYLHMRLERLLSHRSSNPPNNLSEGALEKRNLIRELISIKEEEDCYGEEPNSLNVQIQHQNKEFLFVKLMKEKVYSWLIRKVIEGGKGPHILDDEGQGLIHLAAALGYDWAIRPIVAAGVSINFRDINGWTALHWAAFCGRELTVGTLITLNAAPGLLADPSPENPLGIPPSELASMNGHKGIAGFLAESSLTSYIESISMGETVKDGVLDVSKRKPVHTVSERRATPISDGFMPADLSLKDSLTAVCNATQAAGRIHLMFRMQSFQRKKLSECSPDELGSSDDTAISFAKARARKSGLSNSPAHAAAVHIQKKFRGWRMRKEFLLIRQRIVKIQAHVRGHQVRKQYKKIVWSVGILDKIILRWRRKGSGLRGFRSDAAAKNPSAVLEPPKEDDYDFLAKGRRQTEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCQETKASNMAITSTREEIIEGDDMIDIDSLLDDDALMSMTFD 1089
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2003464 2018320 - CmoCh19G002740.1 Cmo19g00274 403434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00274 1089 SUPERFAMILY E set domains 504 588 IPR014756 -
Cmo19g00274 1089 Gene3D Immunoglobulins 497 592 IPR013783 -
Cmo19g00274 1089 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Cmo19g00274 1089 Pfam IQ calmodulin-binding motif 914 933 IPR000048 GO:0005515
Cmo19g00274 1089 Pfam IQ calmodulin-binding motif 938 957 IPR000048 GO:0005515
Cmo19g00274 1089 Gene3D - 666 822 IPR036770 -
Cmo19g00274 1089 Gene3D - 913 960 - -
Cmo19g00274 1089 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 1089 - -
Cmo19g00274 1089 MobiDBLite consensus disorder prediction 147 188 - -
Cmo19g00274 1089 MobiDBLite consensus disorder prediction 147 193 - -
Cmo19g00274 1089 ProSiteProfiles IQ motif profile. 936 960 IPR000048 GO:0005515
Cmo19g00274 1089 SUPERFAMILY Ankyrin repeat 688 798 IPR036770 -
Cmo19g00274 1089 SMART CG_1_2 18 136 IPR005559 GO:0003677
Cmo19g00274 1089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 913 963 IPR027417 -
Cmo19g00274 1089 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 1 1089 - -
Cmo19g00274 1089 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Cmo19g00274 1089 SMART iq_5 912 934 IPR000048 GO:0005515
Cmo19g00274 1089 SMART iq_5 935 957 IPR000048 GO:0005515
Cmo19g00274 1089 ProSiteProfiles IQ motif profile. 913 942 IPR000048 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g00349 Cmo-Chr17:2121689 Cmo19g00274 Cmo-Chr19:2003464 2.53E-40 dispersed
Cmo17g01382 Cmo-Chr17:10719368 Cmo19g00274 Cmo-Chr19:2003464 3.31E-47 dispersed
Cmo17g01384 Cmo-Chr17:10730213 Cmo19g00274 Cmo-Chr19:2003464 1.16E-104 dispersed
Cmo14g01600 Cmo-Chr14:12669516 Cmo19g00274 Cmo-Chr19:2003464 2.10E-61 transposed
Cmo16g00771 Cmo-Chr16:3866459 Cmo19g00274 Cmo-Chr19:2003464 1.14E-38 transposed
Cmo11g01484 Cmo-Chr11:10488400 Cmo19g00274 Cmo-Chr19:2003464 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11609 PF03859 CG-1 9.00E-51 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00274 K21596 - csv:101203707 1786.54