Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00274 ATGGCGGACCGTGGATCTTACGGCTTGGCTCCTCGTCTAGATATTGACCAGTTATTGATAGAAGCAAAACATCGTTGGTTACGTCCAGCTGAAATTTGTGAAATACTCCGTAACTATCCTAAGTTTCAAATTGCTTCAGAGCCTCCAGATAGACCTTCAAGTGGGTCACTTTTTCTCTTTGATCGAAAGGTTCTGAGGTACTTTAGAAAGGATGGACATAAATGGAGGAAGAAGAAAGATGGCAAAACAGTAAGAGAAGCACATGAGAAGCTGAAGGTTGGAAGCATTGATGTATTGCACTGCTATTATGCCCATGGAGAAGAAAATGAGAACTTTCAAAGGCGCAGTTATTGGATGCTTGAAGAGCATTTAATGCACATCGTTTTTGTCCACTACTTGGAAGTTAAGGGTAATAGAACCAATATTGGAGCTGTCGTTGAGACTGATGAGGTTTCATCAAGTTCACAGAAGAGCAGCCCTACGAGTGCTAGCTATTCCAGCAGTTATAATCAAGCAGCTTCTGAAAATGCAGATTCCCCCAGTCCAACTAGCCCTTTGACACCATTTTGTGAAGATTGTGATACGGAAGACACCGGCCAAGCAACTTCAAGATTTCGCTCATTTCCCACATCACCAAAAATGGGAAATGGTCTTCTGATGAATAAACAAGATGCTGGTCAATCAAATTTTTATTTTCCGCATTCTTCTTCCAACACATCAGTTCCTGCTGTGGATTATGTATCACAAGTTCAGAAAGATGTACTTGGGGGTAACATTTGTGGTACCAATGTGACGGATTCTCAGAAGACGCTCAGTTCTGCCTCGTGGGAAGAGATCTTGCAACATTGTACAACTGGATTTCAGGCTGTACCTTCTCATGTTTTATCCTCTTTGATTGAACCTGTTTCTTCTGGAATTGTCGTTGGACAAGAGAATTCAATTCCTGGCAAGCCTTCAACCAGTAATAGTGCTATTACAGAGGATTTTGGGAGTTCTCTGACAATGAACCCAAACTGGCAGGTTTCTTTTGAAGACAATACTTCGTCCTTTTCAAAAGAGTACGTTGACCAGTTTCCAGAATTGTATTCAGTTTATGACATAGATAGCAGGTTAACTGAGCAGAAATCTCATAATGCAACTTTTGGAAGTGGTCATGAGATGTCTTGTGCTCATCCTGGCATAGAGAATGAGGAGATTTTGCCAAACAACCTTGAATTACAGTTCAAAGAAGGAGAATCGTATTCTGCTATGAGGTTGAGTTCTGAAAATGATACATCTAAAGAAGGTACCGTTGGCTATTCTTTGAGTTTGAAACAATCATTAATAGACGGAGAGGAGAGTTTAAAGAAAGTTGACAGCTTCTCGAGGTGGGTATCCAGAGAGCTTGTCGAAGTTGATGATTTGCACATGCATCCATCATCTGGCTTGTCTTGGAGCACCGTAGAATGTGGTGATATGGTAGATAATTCATCATTAAGCCCTTCTCTTTCTGAAGACCAGCTTTTCAGTATAATAGAATTTTCTCCAAAGTGGACACTTGCAGATTTGGAAACTGAGGTTGTGATTATAGGAAAGTTTCTGGGGAACAATCATGGCACAAAATGTTATTGGTCATGTATGTTTGGGGAAGTCGAAGTTCCTGCAGAGGTTTTGGCTGATGGGATTCTATGCTGCCATGCACCACCACATAGTGTTGGGCAAGTCCCTTTTTATGTCACATGTTCCAACAGATTAGCATGCAGTGAGATTCGTGAGTTTGATTACTTGGCAGGCTCTGCTCAAGATGTTGATGTTACCGAAGTATATACTGCTGGTGCTACAGAGGAATTATATTTGCATATGCGATTGGAGAGGTTACTGTCCCATAGATCTTCAAATCCTCCAAATAATCTCTCTGAAGGTGCTTTGGAGAAACGGAACTTAATCAGAGAGCTTATCTCAATAAAAGAAGAAGAAGATTGTTATGGGGAAGAGCCAAATTCTCTTAATGTTCAAATTCAGCATCAAAACAAGGAGTTTCTTTTTGTAAAGCTGATGAAAGAAAAAGTGTACTCGTGGCTTATCCGCAAAGTCATTGAAGGTGGCAAAGGTCCTCATATATTGGATGATGAGGGACAGGGGTTAATTCATTTAGCAGCAGCCCTTGGTTATGATTGGGCAATCCGACCAATTGTCGCTGCAGGAGTGAGCATAAACTTCCGAGACATTAACGGATGGACTGCTCTCCATTGGGCAGCATTCTGTGGCAGGGAGTTGACAGTTGGAACCCTTATAACATTGAATGCTGCTCCTGGATTGCTGGCTGATCCTTCTCCAGAAAATCCTTTGGGGATACCGCCATCTGAACTTGCGTCGATGAATGGGCACAAAGGGATTGCTGGTTTCCTTGCAGAGTCATCATTGACCAGCTATATCGAATCCATATCAATGGGGGAGACCGTAAAAGATGGTGTGCTGGACGTTTCAAAGAGGAAACCTGTGCATACTGTTTCTGAACGAAGGGCAACACCGATAAGTGATGGTTTTATGCCTGCTGATTTGTCCTTGAAGGATTCATTGACTGCTGTCTGCAATGCTACTCAAGCTGCTGGGCGTATACATCTGATGTTTAGAATGCAGTCATTTCAGAGGAAAAAATTATCGGAGTGTAGTCCTGATGAACTTGGATCCTCAGATGATACTGCTATTTCATTTGCCAAAGCCAGGGCACGTAAGTCTGGACTAAGTAACAGCCCGGCCCATGCCGCTGCAGTTCACATACAGAAAAAGTTCCGTGGTTGGAGAATGAGAAAAGAGTTCTTGCTAATACGTCAAAGAATAGTGAAAATTCAGGCCCACGTGAGAGGACACCAGGTGAGGAAGCAATATAAAAAGATCGTCTGGTCGGTAGGCATATTAGACAAGATCATTTTGAGATGGAGACGGAAGGGGAGTGGTTTGCGAGGTTTCCGATCAGATGCAGCTGCAAAGAATCCATCCGCTGTGTTGGAACCGCCTAAAGAGGATGATTATGATTTTCTGGCGAAAGGAAGGAGGCAGACTGAGGAGAGATTTCAAAAAGCACTGACTAGAGTCAAGTCCATGGCTCAGTATCCCGAGGGACGAGACCAATACCGTAGGCTTCTTACCGTCGTTCAAAAGTGCCAAGAAACTAAGGCAAGTAATATGGCTATTACTAGCACTAGAGAAGAGATAATAGAAGGCGATGACATGATTGATATCGACTCACTTCTGGACGACGACGCTTTAATGTCTATGACATTTGATTGA 3270 42.57 MADRGSYGLAPRLDIDQLLIEAKHRWLRPAEICEILRNYPKFQIASEPPDRPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVREAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEHLMHIVFVHYLEVKGNRTNIGAVVETDEVSSSSQKSSPTSASYSSSYNQAASENADSPSPTSPLTPFCEDCDTEDTGQATSRFRSFPTSPKMGNGLLMNKQDAGQSNFYFPHSSSNTSVPAVDYVSQVQKDVLGGNICGTNVTDSQKTLSSASWEEILQHCTTGFQAVPSHVLSSLIEPVSSGIVVGQENSIPGKPSTSNSAITEDFGSSLTMNPNWQVSFEDNTSSFSKEYVDQFPELYSVYDIDSRLTEQKSHNATFGSGHEMSCAHPGIENEEILPNNLELQFKEGESYSAMRLSSENDTSKEGTVGYSLSLKQSLIDGEESLKKVDSFSRWVSRELVEVDDLHMHPSSGLSWSTVECGDMVDNSSLSPSLSEDQLFSIIEFSPKWTLADLETEVVIIGKFLGNNHGTKCYWSCMFGEVEVPAEVLADGILCCHAPPHSVGQVPFYVTCSNRLACSEIREFDYLAGSAQDVDVTEVYTAGATEELYLHMRLERLLSHRSSNPPNNLSEGALEKRNLIRELISIKEEEDCYGEEPNSLNVQIQHQNKEFLFVKLMKEKVYSWLIRKVIEGGKGPHILDDEGQGLIHLAAALGYDWAIRPIVAAGVSINFRDINGWTALHWAAFCGRELTVGTLITLNAAPGLLADPSPENPLGIPPSELASMNGHKGIAGFLAESSLTSYIESISMGETVKDGVLDVSKRKPVHTVSERRATPISDGFMPADLSLKDSLTAVCNATQAAGRIHLMFRMQSFQRKKLSECSPDELGSSDDTAISFAKARARKSGLSNSPAHAAAVHIQKKFRGWRMRKEFLLIRQRIVKIQAHVRGHQVRKQYKKIVWSVGILDKIILRWRRKGSGLRGFRSDAAAKNPSAVLEPPKEDDYDFLAKGRRQTEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCQETKASNMAITSTREEIIEGDDMIDIDSLLDDDALMSMTFD 1089
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2003464 2018320 - CmoCh19G002740.1 Cmo19g00274 403434

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00274 1089 SUPERFAMILY E set domains 504 588 IPR014756 -
Cmo19g00274 1089 Gene3D Immunoglobulins 497 592 IPR013783 -
Cmo19g00274 1089 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Cmo19g00274 1089 Pfam IQ calmodulin-binding motif 914 933 IPR000048 GO:0005515
Cmo19g00274 1089 Pfam IQ calmodulin-binding motif 938 957 IPR000048 GO:0005515
Cmo19g00274 1089 Gene3D - 666 822 IPR036770 -
Cmo19g00274 1089 Gene3D - 913 960 - -
Cmo19g00274 1089 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 1089 - -
Cmo19g00274 1089 MobiDBLite consensus disorder prediction 147 188 - -
Cmo19g00274 1089 MobiDBLite consensus disorder prediction 147 193 - -
Cmo19g00274 1089 ProSiteProfiles IQ motif profile. 936 960 IPR000048 GO:0005515
Cmo19g00274 1089 SUPERFAMILY Ankyrin repeat 688 798 IPR036770 -
Cmo19g00274 1089 SMART CG_1_2 18 136 IPR005559 GO:0003677
Cmo19g00274 1089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 913 963 IPR027417 -
Cmo19g00274 1089 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 1 1089 - -
Cmo19g00274 1089 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Cmo19g00274 1089 SMART iq_5 912 934 IPR000048 GO:0005515
Cmo19g00274 1089 SMART iq_5 935 957 IPR000048 GO:0005515
Cmo19g00274 1089 ProSiteProfiles IQ motif profile. 913 942 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00274 K21596 CAMTA; calmodulin-binding transcription activator - csv:101203707 1786.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g00349 Cmo-Chr17:2121689 Cmo19g00274 Cmo-Chr19:2003464 2.53E-40 dispersed
Cmo17g01382 Cmo-Chr17:10719368 Cmo19g00274 Cmo-Chr19:2003464 3.31E-47 dispersed
Cmo17g01384 Cmo-Chr17:10730213 Cmo19g00274 Cmo-Chr19:2003464 1.16E-104 dispersed
Cmo14g01600 Cmo-Chr14:12669516 Cmo19g00274 Cmo-Chr19:2003464 2.10E-61 transposed
Cmo16g00771 Cmo-Chr16:3866459 Cmo19g00274 Cmo-Chr19:2003464 1.14E-38 transposed
Cmo11g01484 Cmo-Chr11:10488400 Cmo19g00274 Cmo-Chr19:2003464 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo19g00274 . 1 1089 CAMTA Transcription Factor Family AT5G64220 52.8 9.9e-271 930.6
Cmo11g01484 . 1 1090 CAMTA Transcription Factor Family AT5G64220 53.1 9.2e-269 924.1
Cmo17g01382 . 2 110 CAMTA Transcription Factor Family AT5G64220 63.3 2.1e-39 162.2
Cmo08g00180 . 5 920 CAMTA Transcription Factor Family AT1G67310 50.8 2.1e-241 833.2
Cmo17g01384 . 27 577 CAMTA Transcription Factor Family AT1G67310 58.3 2.8e-169 593.6
Cmo17g01382 . 1 109 CAMTA Transcription Factor Family AT1G67310 76.1 1.7e-46 185.7
Cmo17g00349 CCT,CST 34 902 CAMTA Transcription Factor Family AT3G16940 54.6 4.2e-261 898.3
Cmo08g01236 CCT,CST 34 907 CAMTA Transcription Factor Family AT3G16940 55.0 8.8e-259 890.6
Cmo17g00349 CCT,CST 11 626 CAMTA Transcription Factor Family AT4G16150 52.8 2.8e-192 669.8
Cmo08g01236 CCT,CST 11 631 CAMTA Transcription Factor Family AT4G16150 52.4 4.4e-190 662.5
Cmo19g00274 . 1 1089 CAMTA Transcription Factor Family AT5G64220 52.8 9.9e-271 930.6
Cmo11g01484 . 1 1090 CAMTA Transcription Factor Family AT5G64220 53.1 9.2e-269 924.1
Cmo17g01382 . 2 110 CAMTA Transcription Factor Family AT5G64220 63.3 2.1e-39 162.2
Cmo08g00180 . 5 920 CAMTA Transcription Factor Family AT1G67310 50.8 2.1e-241 833.2
Cmo17g01384 . 27 577 CAMTA Transcription Factor Family AT1G67310 58.3 2.8e-169 593.6
Cmo17g01382 . 1 109 CAMTA Transcription Factor Family AT1G67310 76.1 1.7e-46 185.7
Cmo17g00349 CCT,CST 11 626 CAMTA Transcription Factor Family AT4G16150 52.8 2.8e-192 669.8
Cmo08g01236 CCT,CST 11 631 CAMTA Transcription Factor Family AT4G16150 52.4 4.4e-190 662.5
Cmo17g00349 CCT,CST 34 902 CAMTA Transcription Factor Family AT3G16940 54.6 4.2e-261 898.3
Cmo08g01236 CCT,CST 34 907 CAMTA Transcription Factor Family AT3G16940 55.0 8.8e-259 890.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006263 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 0 4 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11609 PF03859 CG-1 9.00E-51 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00274 Cmo_Chr19 FPKM 17.959406 17.418192 13.646667 14.237321 15.344882 15.544564 15.211413 15.418153 15.896534 16.327259