Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00288 ATGAGCGGGCGGATCGTGAGCCGAGAGGATCCGGTGCAGTCGGAGCGGCACAGCGAGGCAGGCAGCGTTGCACCACCTTCGAAGGTGGGCGTGCCGCCGAGGAAGAACGCGTGGGAGGAGTTTAAATCTGTGGTGAATGAGACTTTCTTCTCCGATCAGCCTCTTAGGCATTTCAAGGACCAGCCCAAGCGCAAGAAAGTTGCTCTCTTTGTGCAAGGCCTCTTCCCTGTGTTCCAATGGGGACGGGGATATAACTTCAGTAAGTTCAAAGGGGACCTCATTGCTGGCTTAACCATTGCTAGTCTTTGTATTCCTCAGGATATTGGATATGCCAAGCTTGCCAATTTGCCAGCTGAAAATGGACTTTATAGTAGCTTTGTCCCACCATTGGTCTACGCAGTGATGGGAAGCTCTAGAGACATAGCAATCGGCCCGGTCGCAGTCGTGTCACTTTTACTCGGAACACTCCTATCGCAGGTATACGACCCGGTGAAAGAAGCCGAAGAATACAAACGGCTAGCTTTCACGGCAACTTTCTTCGCCGGAGTAACTCAGCTAGCTCTAGGCTTCCTCCGGCTAGGATTCTTGATCGACTTTCTATCACATGCTGCGATTGTTGGGTTCATGGGTGGCGCCGCTGTCACCATCGCCCTCCAACAGCTGAAAGGTCTTCTCGGCATAAAAAACTTCACCAAGAAAACTGATATCATTTCAGTGATGCGCTCAGTTTGGAGTAATGTGCAGCATGGGTGGAATTGGCAGACTATACTGATAGGGGTATCATTTTTGGTGTTCCTTTTAGCTACCAAATATATCGGCAAGAAGCATAAGAAACTGTTTTGGATACCTGCCATTGCGCCCTTGACATCGGTGATACTCTCAACTTTTTTTGTGTATATCACTCGAGCTGATAAAGATGGAGTTCAGATTGTAAAACACATAGATAAAGGAATAAATCCACCATCCCTTGATAAGATCTTCTTCCATGGAGACAATCTCACCAAAGGTTTCAAAATTGGAGTGGTTGCTGGTTTGATTGCCCTCACGGAAGCTGTGGCCATTGCAAGAACATTCGCAGACTTAAAGGACTACGAGATCAATGGTAACAAAGAAATGATGGCTCTTGGCACCATGAACATTGCTGGCTCCATGACTTCTTGCTATGTAGCCACAGGATCATTCTCCCGGTCGGCTGTGAACTACATGGCTGGCTGCAGCACACCGATGTCGAACATCGTCATGGCATGCGTCGTTCTCTTGACCTTAGAGCTCATCACACCCCTTTTCAAGTATACCCCTAATGCCATTCTCGCCTCCATCATCATTTGCGCCGTGATTGGGCTCATCGACATCGACGCCGTGATATTGCTATGGAAGATCGATAAATTCGACTTCATTGCTTGCATGGGAGCTTTCTTCGGCGTCGTCTTTGATTCGGTCGAGATTGGTCTTCTCATTGCTGTGAGTTTGTCGCTGTTCAAAATTCTATTGCAAGTGACGAGACCTCGCATTGCTTTGCTTGGGAAGCTCCCAAAGATTGCCATTTTTAGAAACATTTTGCAATACCCTGGGGCAAAGAGGATTGATGGAATCCTCATGGTTAGGGTTGATTCTTCAATATACTTCTCCAATGCCAACTATGTCAAAGAAAGGATACTGAGATGGCTAGCAGATGAAACAGAGAAGCTCAAAGACCAATCTCTCCCCATCAAAGTCGTGGTCATCGACATGTCTCCGGTAAACGATATCGACACGAGCGGCATCCATGCGATTGAGGGATTGTACTCTCATTTGCAGAAGAAGGAAATTGAGCTTGCACTTGCAAATCCAGGTCCAGTGATAATGGAGAAGCTCTTAGCTGCAAACTTCGACAAGCTCATTGGAGAAGACAACATTTTCCTTAGTGTCAACGAAGCTATTAAGACTTATGCCCCAAATGCGGCTCTTGATCCTTAA 1956 47.14 MSGRIVSREDPVQSERHSEAGSVAPPSKVGVPPRKNAWEEFKSVVNETFFSDQPLRHFKDQPKRKKVALFVQGLFPVFQWGRGYNFSKFKGDLIAGLTIASLCIPQDIGYAKLANLPAENGLYSSFVPPLVYAVMGSSRDIAIGPVAVVSLLLGTLLSQVYDPVKEAEEYKRLAFTATFFAGVTQLALGFLRLGFLIDFLSHAAIVGFMGGAAVTIALQQLKGLLGIKNFTKKTDIISVMRSVWSNVQHGWNWQTILIGVSFLVFLLATKYIGKKHKKLFWIPAIAPLTSVILSTFFVYITRADKDGVQIVKHIDKGINPPSLDKIFFHGDNLTKGFKIGVVAGLIALTEAVAIARTFADLKDYEINGNKEMMALGTMNIAGSMTSCYVATGSFSRSAVNYMAGCSTPMSNIVMACVVLLTLELITPLFKYTPNAILASIIICAVIGLIDIDAVILLWKIDKFDFIACMGAFFGVVFDSVEIGLLIAVSLSLFKILLQVTRPRIALLGKLPKIAIFRNILQYPGAKRIDGILMVRVDSSIYFSNANYVKERILRWLADETEKLKDQSLPIKVVVIDMSPVNDIDTSGIHAIEGLYSHLQKKEIELALANPGPVIMEKLLAANFDKLIGEDNIFLSVNEAIKTYAPNAALDP 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2113518 2119582 - CmoCh19G002880.1 Cmo19g00288 403448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00288 651 Gene3D STAS domain 516 646 IPR036513 -
Cmo19g00288 651 TIGRFAM sulP: sulfate permease 76 639 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cmo19g00288 651 PANTHER SULFATE TRANSPORTER 20 650 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cmo19g00288 651 Pfam Sulfate permease family 89 469 IPR011547 GO:0016021
Cmo19g00288 651 MobiDBLite consensus disorder prediction 1 32 - -
Cmo19g00288 651 PANTHER SULFATE TRANSPORTER 1.2-LIKE 20 650 - -
Cmo19g00288 651 ProSiteProfiles STAS domain profile. 521 643 IPR002645 -
Cmo19g00288 651 CDD STAS_SulP_like_sulfate_transporter 522 636 - -
Cmo19g00288 651 SUPERFAMILY SpoIIaa-like 526 642 IPR036513 -
Cmo19g00288 651 Pfam STAS domain 522 639 IPR002645 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01470 Cmo-Chr1:11419047 Cmo19g00288 Cmo-Chr19:2113518 0 dispersed
Cmo04g02421 Cmo-Chr4:17976223 Cmo19g00288 Cmo-Chr19:2113518 0 dispersed
Cmo19g00288 Cmo-Chr19:2113518 Cmo06g01389 Cmo-Chr6:10193827 0 dispersed
Cmo19g00288 Cmo-Chr19:2113518 Cmo15g00746 Cmo-Chr15:3662569 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00288 K17470 - csv:101202746 1171.38