Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo19g00311 | ATGACGGGGTTGTTCTATTTAAGTGAAAAACAAGAGGAAAATCAAGAACAAAGAGGAAGAGAACAGCAATTGTTCTTGTCCAAGGGCTTGGAGATATGGCCACAACAAAATCTAGAGAATTACATTTCATTTGGAGTGGGTCCAACTCGGAGGAACTTCATGATCAACGCCTCCGATCGTCCCGATCAGTTTGTCCCGAGATTAGGGTTTTCGATCAATTGTCAAGATTGTGGGAATCAAGCTAAGAAAGATTGTTCCCATTTGAGATGTAGAACTTGTTGTAAGAGCCGAGGGTTTCATTGCCAAACTCATGTCAAAAGTACTTGGGTTCCGGCTACCAAGCGCCGGGAACGGCAACTACAACGTCACCAAATTGTTCGGCAACAATCCCAACTAGATCAGCCCGATCAGACCGCTCCGGTCGACACTCCAGGGTTGGAAGTTGCGAATTTTCCAGCTGAATTCAACTCCTCAGCCGTTTTTCGGTGCGTGAAAGTCAGTGCCATCGACGATGTCGAAGAACAATTCGCATATCAAACATCAGTGAACATTGGTGGGCATATGTTCAAAGGAATTCTTTACGACCAAGGTCCTGAAAGCACTCCGAATTTGAGCACGGGCGGCGAGAGCTCGTATTGCTACGGCGGAGAAGACGATAATCAAGCGCTCGAGCTGGTGATCGGAGCATCGAACGGAGGGTGGAGGAGTAACAAACCAACCCCATTTATGGAGTCTTCTCTATATCCCATCCCAATCAACACATTCAACACGGGTACGCAAAATTTCCCTTCCTCTAGAACTTGA | 804 | 46.64 | MTGLFYLSEKQEENQEQRGREQQLFLSKGLEIWPQQNLENYISFGVGPTRRNFMINASDRPDQFVPRLGFSINCQDCGNQAKKDCSHLRCRTCCKSRGFHCQTHVKSTWVPATKRRERQLQRHQIVRQQSQLDQPDQTAPVDTPGLEVANFPAEFNSSAVFRCVKVSAIDDVEEQFAYQTSVNIGGHMFKGILYDQGPESTPNLSTGGESSYCYGGEDDNQALELVIGASNGGWRSNKPTPFMESSLYPIPINTFNTGTQNFPSSRT | 267 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 19 | 2339193 | 2340366 | - | CmoCh19G003110.1 | Cmo19g00311 | 403471 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo19g00311 | 267 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 13 | 265 | IPR007818 | GO:0003700|GO:0006355 | |
| Cmo19g00311 | 267 | PANTHER | PROTEIN SHORT INTERNODES | 13 | 265 | - | - | |
| Cmo19g00311 | 267 | TIGRFAM | LRP1_Cterm: LRP1 C-terminal domain | 151 | 198 | IPR006511 | - | |
| Cmo19g00311 | 267 | TIGRFAM | put_zinc_LRP1: putative zinc finger domain, LRP1 type | 73 | 115 | IPR006510 | - | |
| Cmo19g00311 | 267 | Pfam | Domain of unknown function (DUF702) | 71 | 199 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo03g00734 | Cmo-Chr3:6254612 | Cmo19g00311 | Cmo-Chr19:2339193 | 2.78E-67 | dispersed | |
| Cmo05g00287 | Cmo-Chr5:1245268 | Cmo19g00311 | Cmo-Chr19:2339193 | 3.63E-94 | dispersed | |
| Cmo07g00450 | Cmo-Chr7:2060308 | Cmo19g00311 | Cmo-Chr19:2339193 | 3.21E-68 | dispersed | |
| Cmo12g00381 | Cmo-Chr12:2364323 | Cmo19g00311 | Cmo-Chr19:2339193 | 7.36E-78 | dispersed | |
| Cmo16g00699 | Cmo-Chr16:3464046 | Cmo19g00311 | Cmo-Chr19:2339193 | 2.53E-53 | dispersed | |
| Cmo19g00311 | Cmo-Chr19:2339193 | Cmo20g00116 | Cmo-Chr20:589618 | 2.57E-40 | dispersed | |
| Cmo19g00311 | Cmo-Chr19:2339193 | Cmo01g02001 | Cmo-Chr1:14124980 | 6.93E-120 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 11611 | PF05142 | DUF702 | 3.20E-52 | No_clan | Cmo | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo19g00311 | - | - | cmos:111464024 | 548.125 |