Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00313 ATGGATCAATCAGAGCGTTCACAGCATCAGCAACAATCACAGCAGCCTGCAGGCGGTGTGGGCGGTGCGGGCGGTGCAGGCACATATTCTAATCCTTACCAAACAGCTCCGTTGGTGGCTTCCGGAACACCCGCCATTACAGTTCCCCCAACTCAGCTTGCCTTTCAGCAGGCTCAGCACTTCCACCACCACCAGCAACAACAGCACCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTCAAGAACCATAGTCTCCCCCTTGCTCGAATCAAGAAGATAATGAAAGCGGATGAAGACGTTCGAATGATTTCAGCTGAAGCACCCGTTGTATTCGCAAAGGCGTGTGAAATGTTCATCTTGGAATTGACTCTACGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAACGATATCGCAGCTGCAATTTCGAGGACCGATGTCTTCGATTTCTTGGTTGATATTATTCCTAGAGACGAACTGAAAGAGGAAGGCCTCGGAATCACTAAAGCCTCTATTCCTGTAGTTGGTTCCCCAGCTGATATTCCTTATTACTATGTTCCCTCGCAGCATCCAGTTGGTGCGACGGGGATGATCATGGGGAAGCAATTGGATCAAGCGAATGTGTACGGTGCCACTGCTCAACAGCCACGACCACCTATGCCGTTCATGCCATGGCCGCACACTCAACCTCAGCAGCAGCAGCAGCAGCAATGA 747 49.13 MDQSERSQHQQQSQQPAGGVGGAGGAGTYSNPYQTAPLVASGTPAITVPPTQLAFQQAQHFHHHQQQQHQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKASIPVVGSPADIPYYYVPSQHPVGATGMIMGKQLDQANVYGATAQQPRPPMPFMPWPHTQPQQQQQQQ 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2356529 2357275 - CmoCh19G003130.1 Cmo19g00313 403473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00313 248 Gene3D Histone, subunit A 54 168 IPR009072 GO:0046982
Cmo19g00313 248 SUPERFAMILY Histone-fold 60 162 IPR009072 GO:0046982
Cmo19g00313 248 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 9 245 - -
Cmo19g00313 248 Pfam Core histone H2A/H2B/H3/H4 63 153 IPR007125 GO:0003677
Cmo19g00313 248 MobiDBLite consensus disorder prediction 1 18 - -
Cmo19g00313 248 MobiDBLite consensus disorder prediction 1 29 - -
Cmo19g00313 248 MobiDBLite consensus disorder prediction 223 248 - -
Cmo19g00313 248 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 9 245 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01369 Cmo-Chr4:6971421 Cmo19g00313 Cmo-Chr19:2356529 5.00E-12 dispersed
Cmo19g00313 Cmo-Chr19:2356529 Cmo20g00152 Cmo-Chr20:748344 3.45E-10 dispersed
Cmo11g01511 Cmo-Chr11:10721143 Cmo19g00313 Cmo-Chr19:2356529 6.13E-135 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11612 PF00125 Histone 7.80E-18 CL0012 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00313 K08066 - csv:101213813 365.155