Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00313 ATGGATCAATCAGAGCGTTCACAGCATCAGCAACAATCACAGCAGCCTGCAGGCGGTGTGGGCGGTGCGGGCGGTGCAGGCACATATTCTAATCCTTACCAAACAGCTCCGTTGGTGGCTTCCGGAACACCCGCCATTACAGTTCCCCCAACTCAGCTTGCCTTTCAGCAGGCTCAGCACTTCCACCACCACCAGCAACAACAGCACCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTCAAGAACCATAGTCTCCCCCTTGCTCGAATCAAGAAGATAATGAAAGCGGATGAAGACGTTCGAATGATTTCAGCTGAAGCACCCGTTGTATTCGCAAAGGCGTGTGAAATGTTCATCTTGGAATTGACTCTACGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAACGATATCGCAGCTGCAATTTCGAGGACCGATGTCTTCGATTTCTTGGTTGATATTATTCCTAGAGACGAACTGAAAGAGGAAGGCCTCGGAATCACTAAAGCCTCTATTCCTGTAGTTGGTTCCCCAGCTGATATTCCTTATTACTATGTTCCCTCGCAGCATCCAGTTGGTGCGACGGGGATGATCATGGGGAAGCAATTGGATCAAGCGAATGTGTACGGTGCCACTGCTCAACAGCCACGACCACCTATGCCGTTCATGCCATGGCCGCACACTCAACCTCAGCAGCAGCAGCAGCAGCAATGA 747 49.13 MDQSERSQHQQQSQQPAGGVGGAGGAGTYSNPYQTAPLVASGTPAITVPPTQLAFQQAQHFHHHQQQQHQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKASIPVVGSPADIPYYYVPSQHPVGATGMIMGKQLDQANVYGATAQQPRPPMPFMPWPHTQPQQQQQQQ 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2356529 2357275 - CmoCh19G003130.1 Cmo19g00313 403473

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00313 248 Gene3D Histone, subunit A 54 168 IPR009072 GO:0046982
Cmo19g00313 248 SUPERFAMILY Histone-fold 60 162 IPR009072 GO:0046982
Cmo19g00313 248 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 9 245 - -
Cmo19g00313 248 Pfam Core histone H2A/H2B/H3/H4 63 153 IPR007125 GO:0003677
Cmo19g00313 248 MobiDBLite consensus disorder prediction 1 18 - -
Cmo19g00313 248 MobiDBLite consensus disorder prediction 1 29 - -
Cmo19g00313 248 MobiDBLite consensus disorder prediction 223 248 - -
Cmo19g00313 248 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 9 245 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00313 K08066 NFYC, HAP5; nuclear transcription factor Y, gamma - csv:101213813 365.155
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01369 Cmo-Chr4:6971421 Cmo19g00313 Cmo-Chr19:2356529 5.00E-12 dispersed
Cmo19g00313 Cmo-Chr19:2356529 Cmo20g00152 Cmo-Chr20:748344 3.45E-10 dispersed
Cmo11g01511 Cmo-Chr11:10721143 Cmo19g00313 Cmo-Chr19:2356529 6.13E-135 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo10g00053 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 88.5 1.4e-87 320.1
Cmo11g00031 . 39 223 CCAAT-HAP5 Transcription Factor Family AT3G48590 88.5 4.0e-87 318.5
Cmo10g01156 . 74 242 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.5 4.4e-54 208.8
Cmo11g01160 . 82 250 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.7 8.3e-53 204.5
Cmo19g00313 . 70 220 CCAAT-HAP5 Transcription Factor Family AT3G48590 66.4 1.9e-52 203.4
Cmo11g01511 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.1 9.2e-52 201.1
Cmo10g01156 . 1 242 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.1 7.5e-54 208.0
Cmo11g01160 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 54.8 1.7e-53 206.8
Cmo11g01511 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 72.1 2.5e-49 193.0
Cmo19g00313 . 30 167 CCAAT-HAP5 Transcription Factor Family AT1G08970 73.8 3.2e-49 192.6
Cmo10g00053 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 1.0e-42 171.0
Cmo11g00031 . 39 137 CCAAT-HAP5 Transcription Factor Family AT1G08970 82.8 2.9e-42 169.5
Cmo11g01160 . 61 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.4 2.2e-60 229.6
Cmo10g01156 . 23 242 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.5 5.5e-59 224.9
Cmo19g00313 . 30 211 CCAAT-HAP5 Transcription Factor Family AT1G54830 62.3 1.1e-51 200.7
Cmo11g01511 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.6 3.3e-51 199.1
Cmo10g00053 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 66.7 5.5e-51 198.4
Cmo11g00031 . 39 197 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.1 1.2e-50 197.2
Cmo10g00053 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.9 6.6e-38 154.8
Cmo11g00031 . 39 199 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.0 1.1e-37 154.1
Cmo10g00053 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 80.9 6.5e-80 294.7
Cmo11g00031 . 39 223 CCAAT-HAP5 Transcription Factor Family AT5G63470 80.9 1.1e-79 293.9
Cmo11g01160 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.2 9.2e-50 194.5
Cmo10g01156 . 74 242 CCAAT-HAP5 Transcription Factor Family AT5G63470 62.9 2.1e-49 193.4
Cmo19g00313 . 70 220 CCAAT-HAP5 Transcription Factor Family AT5G63470 64.3 2.7e-49 193.0
Cmo11g01511 . 82 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.2 6.0e-49 191.8
Cmo11g01511 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.1 1.4e-64 243.4
Cmo19g00313 . 33 200 CCAAT-HAP5 Transcription Factor Family AT1G56170 76.9 6.4e-62 234.6
Cmo11g01160 . 82 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 72.7 1.1e-50 197.2
Cmo10g01156 . 48 210 CCAAT-HAP5 Transcription Factor Family AT1G56170 68.0 2.5e-50 196.1
Cmo10g00053 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 5.6e-50 194.9
Cmo11g00031 . 39 162 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 5.6e-50 194.9
Cmo04g01369 . 1 280 CCAAT-HAP5 Transcription Factor Family AT3G12480 50.8 6.3e-58 221.9
Cmo05g00443 . 3 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 63.5 2.7e-37 152.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000741 2 9 3 3 3 2 3 2 2 2 2 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 1 17 4 2 95
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11612 PF00125 Histone 7.80E-18 CL0012 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00313 Cmo_Chr19 FPKM 15.198015 15.589984 22.523918 22.094955 9.502794 10.404823 7.990506 11.296832 11.295004 11.31329