Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo19g00313 | ATGGATCAATCAGAGCGTTCACAGCATCAGCAACAATCACAGCAGCCTGCAGGCGGTGTGGGCGGTGCGGGCGGTGCAGGCACATATTCTAATCCTTACCAAACAGCTCCGTTGGTGGCTTCCGGAACACCCGCCATTACAGTTCCCCCAACTCAGCTTGCCTTTCAGCAGGCTCAGCACTTCCACCACCACCAGCAACAACAGCACCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTCAAGAACCATAGTCTCCCCCTTGCTCGAATCAAGAAGATAATGAAAGCGGATGAAGACGTTCGAATGATTTCAGCTGAAGCACCCGTTGTATTCGCAAAGGCGTGTGAAATGTTCATCTTGGAATTGACTCTACGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAACGATATCGCAGCTGCAATTTCGAGGACCGATGTCTTCGATTTCTTGGTTGATATTATTCCTAGAGACGAACTGAAAGAGGAAGGCCTCGGAATCACTAAAGCCTCTATTCCTGTAGTTGGTTCCCCAGCTGATATTCCTTATTACTATGTTCCCTCGCAGCATCCAGTTGGTGCGACGGGGATGATCATGGGGAAGCAATTGGATCAAGCGAATGTGTACGGTGCCACTGCTCAACAGCCACGACCACCTATGCCGTTCATGCCATGGCCGCACACTCAACCTCAGCAGCAGCAGCAGCAGCAATGA | 747 | 49.13 | MDQSERSQHQQQSQQPAGGVGGAGGAGTYSNPYQTAPLVASGTPAITVPPTQLAFQQAQHFHHHQQQQHQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKASIPVVGSPADIPYYYVPSQHPVGATGMIMGKQLDQANVYGATAQQPRPPMPFMPWPHTQPQQQQQQQ | 248 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 2356529 | 2357275 | - | CmoCh19G003130.1 | Cmo19g00313 | 403473 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo19g00313 | 248 | Gene3D | Histone, subunit A | 54 | 168 | IPR009072 | GO:0046982 | |
Cmo19g00313 | 248 | SUPERFAMILY | Histone-fold | 60 | 162 | IPR009072 | GO:0046982 | |
Cmo19g00313 | 248 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 | 9 | 245 | - | - | |
Cmo19g00313 | 248 | Pfam | Core histone H2A/H2B/H3/H4 | 63 | 153 | IPR007125 | GO:0003677 | |
Cmo19g00313 | 248 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Cmo19g00313 | 248 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Cmo19g00313 | 248 | MobiDBLite | consensus disorder prediction | 223 | 248 | - | - | |
Cmo19g00313 | 248 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 9 | 245 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g01369 | Cmo-Chr4:6971421 | Cmo19g00313 | Cmo-Chr19:2356529 | 5.00E-12 | dispersed | |
Cmo19g00313 | Cmo-Chr19:2356529 | Cmo20g00152 | Cmo-Chr20:748344 | 3.45E-10 | dispersed | |
Cmo11g01511 | Cmo-Chr11:10721143 | Cmo19g00313 | Cmo-Chr19:2356529 | 6.13E-135 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11612 | PF00125 | Histone | 7.80E-18 | CL0012 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo19g00313 | K08066 | - | csv:101213813 | 365.155 |