Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00317 ATGGAGAATATAACCGCGCAATTAAAAAGGGGAATATCGCGGCAATTCTCCACCGGCTCCTTACGCCGGAGCCTCAGTCGCCAATTCTCCAGGCAGTCGTCTCTTGATCCGAGGAGGAATAATATGAGATTTAGCTTTGGGAGACAGTCTTCTTTGGACCCTATTCGGCGTTGTCCTGATGAGGAAAATGAACTTTCTGTGCCCGAGAATTTGGACTCCACGATGCAGCTTCTTTTCATGGCTTGCCGTGGCGATGTTAGAGGCGTTCAGGATTTGCTTAATGATGGTACCGATGTTAATAGTATCGATTTGGATGGTCGCACCGCTTTGCATATTGCTGCTTGTGAAGGCCATGCTGAGGTTGTTAAGCTTCTGCTTAGCCGTTGGGCTAATATTGACGCTCGTGATCGTTGGGGGAGTACGAAATCGAGGAAGACACCAATGACAGTTGCAAATCCTAGGGAAGTTCCTGAGTATGAGCTTAATCCATTGGAGCTTCAGATTCGAAGGGGTGATGGTATATCAAAGGCATGCCCCTTCAGCATTTTTGGGACATATCAAGTTGCCAAATGGAATGGGACAAAAGTGTCTGTGAAAATTCTTGATAGAGATTGTTATTCTAACCCGGATTCTATAAACGCATTCAAACACGAGTTGACATTACTCGAAAAGGTCCGACATCCCAACGTAGTTCAGTTTGTCGGCGCCGTTACCCAGAATTTGCCAATGATGATCGTTTCCGAATACCATCCAAAGGGTGATTTAGGTTGCTATCTTCAAAAGAAAGGTCGTTTATCTCCATCGAAAGCCTTAAGATTCGCTCTCGATATTGCTAGGCAAGTTCTGTTTTTCTCATACTTCATTAACATTTATAAATGTTATGCTACTAATTCCTTATCAACAAGCATATTGTTATTCTATACATTTCTAAGACATTTCCTTTCGATGTTCGATCCCTCTCGTGATATTCTGGCTCCAAACCCGGAGGGAATGAACTATCTTCATGAATGCAAACCCGATCCGATTATCCACTGTGATTTAAAGCCAAAAAATATTTTGCTGGATAATGGAGGACTACTCAAAGTTGCTGGCTTTGGCTTGATAAGATTGTCAAAATTGTCAGCTGACAAAGCAAAACTAGCTCACCCAGTGGTTATTGACCATTCAAACATGTACTTAGCACCCGAAATTTACAGAGATGAAATATTTGACAGAAGCGTTGATGCATTTTCGTTCGGTCTAATTTTATACGAGATGGTTGAGGGTATTCAGCCACTCCATCCCAGGCCTCCAGAAGAGGCTGCTAAAGCTATTTGTGCAGAAGGAAAGAGACCTCCTTTTAAGATCAAATTGAAAAGTTATCCACCTGATCTAAAAGAATTGATTGAGGAATGCTGGGATCCAGAACCTGTTATGAGGCCTACTTTCTCTGAAATAATTGTAAGGTTGGATAAAATAGTTGCCAACTGCTCAAAACATGGATGGTGGAAGGACACATTTAAACTTCCCTGGAAATAA 1518 42.23 MENITAQLKRGISRQFSTGSLRRSLSRQFSRQSSLDPRRNNMRFSFGRQSSLDPIRRCPDEENELSVPENLDSTMQLLFMACRGDVRGVQDLLNDGTDVNSIDLDGRTALHIAACEGHAEVVKLLLSRWANIDARDRWGSTKSRKTPMTVANPREVPEYELNPLELQIRRGDGISKACPFSIFGTYQVAKWNGTKVSVKILDRDCYSNPDSINAFKHELTLLEKVRHPNVVQFVGAVTQNLPMMIVSEYHPKGDLGCYLQKKGRLSPSKALRFALDIARQVLFFSYFINIYKCYATNSLSTSILLFYTFLRHFLSMFDPSRDILAPNPEGMNYLHECKPDPIIHCDLKPKNILLDNGGLLKVAGFGLIRLSKLSADKAKLAHPVVIDHSNMYLAPEIYRDEIFDRSVDAFSFGLILYEMVEGIQPLHPRPPEEAAKAICAEGKRPPFKIKLKSYPPDLKELIEECWDPEPVMRPTFSEIIVRLDKIVANCSKHGWWKDTFKLPWK 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2394226 2399772 + CmoCh19G003170.1 Cmo19g00317 403477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00317 505 SMART serkin_6 180 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g00317 505 PIRSF ILK 8 144 - -
Cmo19g00317 505 PIRSF ILK 140 504 - -
Cmo19g00317 505 Gene3D Transferase(Phosphotransferase) domain 1 250 499 - -
Cmo19g00317 505 ProSiteProfiles Protein kinase domain profile. 168 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g00317 505 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 142 503 - -
Cmo19g00317 505 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 33 142 - -
Cmo19g00317 505 MobiDBLite consensus disorder prediction 27 46 - -
Cmo19g00317 505 SUPERFAMILY Protein kinase-like (PK-like) 183 483 IPR011009 -
Cmo19g00317 505 ProSitePatterns Serine/Threonine protein kinases active-site signature. 342 354 IPR008271 GO:0004672|GO:0006468
Cmo19g00317 505 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 142 503 - -
Cmo19g00317 505 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 33 142 - -
Cmo19g00317 505 SUPERFAMILY Ankyrin repeat 76 141 IPR036770 -
Cmo19g00317 505 ProSiteProfiles Ankyrin repeat region circular profile. 105 137 - -
Cmo19g00317 505 ProSiteProfiles Ankyrin repeat profile. 105 137 IPR002110 GO:0005515
Cmo19g00317 505 Pfam Protein tyrosine and serine/threonine kinase 329 482 IPR001245 GO:0004672|GO:0006468
Cmo19g00317 505 Pfam Protein tyrosine and serine/threonine kinase 190 283 IPR001245 GO:0004672|GO:0006468
Cmo19g00317 505 Pfam Ankyrin repeat 105 136 IPR002110 GO:0005515
Cmo19g00317 505 SMART ANK_2a 73 101 IPR002110 GO:0005515
Cmo19g00317 505 SMART ANK_2a 105 134 IPR002110 GO:0005515
Cmo19g00317 505 Gene3D - 68 151 IPR036770 -
Cmo19g00317 505 Gene3D Phosphorylase Kinase; domain 1 176 249 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01513 Cmo-Chr11:10732294 Cmo19g00317 Cmo-Chr19:2394226 0 dispersed
Cmo19g00317 Cmo-Chr19:2394226 Cmo20g00274 Cmo-Chr20:1334263 6.48E-113 dispersed
Cmo19g00317 Cmo-Chr19:2394226 Cmo03g01350 Cmo-Chr3:9989335 1.24E-116 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75096 PF07714 PK_Tyr_Ser-Thr 1.30E-24 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00317 - - csv:101213574 810.061