Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo19g00333 | ATGGCTTCCTTCCATGCAGAAGCTTCCGAGTCTAGCAATGTTGATTACACTCAACGAGCTCAGTGGCTCCGAGCCGCAGTTCTCGGAGCCAACGACGGGCTCGTCTCCGTTGCATCGCTGATGATGGGCGTCGGCGCTGTGAAGCCCGACGCCAAAGCCATGCTTATTGCTGGATTTGCGGGGATGGTAGCGGGCGCTTGTAGTATGGCGATCGGAGAGTTCGTGTCGGTTTACACGCAATATGATATACAGAAAGCTCAGCTGAAGAGAGATAGGAAGCAAAAGAATGACATGCAGTCAAGCCACTCGGCCGAGGAGGAAGAGAAGCTACCGAATCCGTTACAGGCCGCGCTCGCATCGGCGATAGCGTTTACGGTCGGAGCGGTTATTCCGTTGCTGTCGGCGGTGTTTATACGAGACCATAAGGTAAGGCTCGGGGTGGTTGCAGCGGTGGCGAGCTTGACGTTGGTGGTTTTTGGAGGAGTTGGAGCCGTCCTAGGGAGAACTCCGGTGGGGAAATCGGCGGCGAGAGTGGTTGTTGGAGGGTGGATGGCAATGGGCATCACTTTTGGGCTTACAAAGCTGCTGGGGTCGAAGGGGCTGTGA | 606 | 56.11 | MASFHAEASESSNVDYTQRAQWLRAAVLGANDGLVSVASLMMGVGAVKPDAKAMLIAGFAGMVAGACSMAIGEFVSVYTQYDIQKAQLKRDRKQKNDMQSSHSAEEEEKLPNPLQAALASAIAFTVGAVIPLLSAVFIRDHKVRLGVVAAVASLTLVVFGGVGAVLGRTPVGKSAARVVVGGWMAMGITFGLTKLLGSKGL | 201 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 19 | 2796842 | 2797447 | + | CmoCh19G003330.1 | Cmo19g00333 | 403493 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo19g00333 | 201 | Pfam | VIT family | 23 | 102 | IPR008217 | GO:0005384|GO:0030026 | |
| Cmo19g00333 | 201 | Pfam | VIT family | 101 | 193 | IPR008217 | GO:0005384|GO:0030026 | |
| Cmo19g00333 | 201 | MobiDBLite | consensus disorder prediction | 89 | 109 | - | - | |
| Cmo19g00333 | 201 | PANTHER | FE(2+)/MN(2+) TRANSPORTER PCL1 | 8 | 198 | IPR008217 | GO:0005384|GO:0030026 | |
| Cmo19g00333 | 201 | PANTHER | VACUOLAR IRON TRANSPORTER HOMOLOG 2.1 | 8 | 198 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo15g00607 | Cmo-Chr15:2949497 | Cmo19g00333 | Cmo-Chr19:2796842 | 3.18E-88 | dispersed | |
| Cmo15g00933 | Cmo-Chr15:4774560 | Cmo19g00333 | Cmo-Chr19:2796842 | 2.38E-09 | dispersed | |
| Cmo19g00333 | Cmo-Chr19:2796842 | Cmo04g02228 | Cmo-Chr4:16650696 | 8.29E-06 | dispersed | |
| Cmo19g00333 | Cmo-Chr19:2796842 | Cmo04g02561 | Cmo-Chr4:18762840 | 9.69E-89 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo19g00333 | K22736 | - | csv:101214875 | 323.553 |