Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00382 ATGGCCCCCACGTCGGCTCTGGCGAAGTATAAGCTGGTCTTTCTCGGAGACCAGTCTGTTGGGAAAACCAGCATCATTACACGCTTCATGTACGACAAATTCGATAATACATATCAGGCTACAATTGGCATTGATTTTCTCTCAAAAACCATGTATCTGGAAGATCGCACCGTTCGACTGCAGTTGTGGGACACTGCTGGACAGGAAAGATTCAGAAGTCTAATTCCAAGCTATATCAGGGACTCATCTGTCGCTGTCATTGTTTTTGATGTTGCAAGCCGGCAAACTTTCGTAAACACTTCAAAATGGATTGAGGAGGTGCGCACCGAGAGGGGCAGTGATGTCATTATAGTGCTTGTTGGGAACAAAACGGACCTTGTGGAGAAGAGGCAAGTCTCCGTAGAGGAAGGAGAAGCCAAAGCCCGTGAACTAAATGTCATGTTTATCGAAACAAGTGCTAAAGCTGGATTTAATATCAAGGCACTGTTCCGAAAAATCGCTGCAGCTTTGCCGGGAATGGAAACTCTCTCATCAGCAAAACAAGAAGACATGGTTGATGTTAACCTGAAGTCCTCAGGCAGTGGTGCTGCACAATCCCAGCAGCAGTCGGGTGGATGTGCCTGCTAA 627 46.73 MAPTSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVFDVASRQTFVNTSKWIEEVRTERGSDVIIVLVGNKTDLVEKRQVSVEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSAKQEDMVDVNLKSSGSGAAQSQQQSGGCAC 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3778375 3783947 + CmoCh19G003820.1 Cmo19g00382 403542

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00382 208 TIGRFAM small_GTP: small GTP-binding protein domain 9 166 IPR005225 GO:0005525
Cmo19g00382 208 CDD Rab6 10 170 - -
Cmo19g00382 208 Gene3D - 5 204 IPR027417 -
Cmo19g00382 208 ProSiteProfiles small GTPase Rho family profile. 3 179 - -
Cmo19g00382 208 PANTHER DRAB5-RELATED 1 208 - -
Cmo19g00382 208 SMART rab_sub_5 10 173 - -
Cmo19g00382 208 PRINTS Transforming protein P21 ras signature 113 126 - -
Cmo19g00382 208 PRINTS Transforming protein P21 ras signature 10 31 - -
Cmo19g00382 208 PRINTS Transforming protein P21 ras signature 33 49 - -
Cmo19g00382 208 PRINTS Transforming protein P21 ras signature 51 73 - -
Cmo19g00382 208 PRINTS Transforming protein P21 ras signature 148 170 - -
Cmo19g00382 208 SMART rho_sub_3 12 172 IPR001806 GO:0003924|GO:0005525
Cmo19g00382 208 SMART ran_sub_2 15 208 - -
Cmo19g00382 208 ProSiteProfiles small GTPase Ras family profile. 5 208 IPR001806 GO:0003924|GO:0005525
Cmo19g00382 208 PANTHER GTP-BINDING PROTEIN RAB6 1 208 - -
Cmo19g00382 208 ProSiteProfiles small GTPase Rab1 family profile. 2 208 - -
Cmo19g00382 208 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 179 IPR027417 -
Cmo19g00382 208 SMART ras_sub_4 7 173 - -
Cmo19g00382 208 Pfam Ras family 11 169 IPR001806 GO:0003924|GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00382 K07893 RAB6A; Ras-related protein Rab-6A - csv:101204395 367.081
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00847 Cmo-Chr3:6700323 Cmo19g00382 Cmo-Chr19:3778375 1.22E-133 dispersed
Cmo07g00548 Cmo-Chr7:2472982 Cmo19g00382 Cmo-Chr19:3778375 4.27E-133 dispersed
Cmo19g00382 Cmo-Chr19:3778375 Cmo04g02680 Cmo-Chr4:19514785 4.94E-48 dispersed
Cmo20g00618 Cmo-Chr20:3028800 Cmo19g00382 Cmo-Chr19:3778375 2.90E-18 dispersed
Cmo19g00382 Cmo-Chr19:3778375 Cmo02g01628 Cmo-Chr2:9394192 2.51E-152 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g626 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo19g00382 . . . . . . Bhi05g00519 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001834 3 2 2 3 3 1 4 2 1 1 1 1 1 2 2 4 1 5 3 2 2 2 2 2 2 1 2 4 3 2 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00382 Cmo_Chr19 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Cmo19g00382 Cmo_Chr00 FPKM 0.0753 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.077624 0.0
Cmo19g00382 Cmo_Chr00 FPKM 0.119337 0.0 0.0 0.0 0.0 0.0 0.0 0.075682 0.171101 0.0