Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00384 ATGAAGCTCATCCCCTTCCTTCCATGGCCGAACCTCCCCATGGCCTTCCTCTTCATCTTCTTCTTTGCTTGTTTTTCCCCTGCTTCTTCACTCCCCCACGATGAAGGACGAGCGCTGATGTCAATCAAGGCCTCGTTTAGCAATGTAGCGAATGTGTTTCTCGACTGGGATGATGATCATAACCACGATTTCTGTTCGTGGCGTGGAGTTTTCTGCGACAATGTTACCCTATCAGTTGCTGCTTTGAACTTATCCAACTTGAATCTGGGTGGGGAGATTTCACCATCCATTGGAGATTTAAGTAATTTACAGTCAATTGATTTTCAAGGGAATAAACTGTCTGGACAAATCCCTGATGAGATTGGTAACTGTGGTTTTCTTGTTCATTTGGACTTGTCTGATAATTTGCTCTATGGAGACATCCCCTTCACTGTTTCAAAGCTTAAGAAGCTCGAGTTCCTAAATCTGAAGACGAACCAGTTGTCCGGTCCGATCCCTTCTACCCTTACCCAGCTTCCTAATCTGAAAACTCTCGATCTTGCACGAAACCAGCTTACCGGAGAGATACCAAGATTAATCTATTGGAATGAAGTTCTGCAGTATCTTGGATTACGTGGGAACGTTCTGACAGGATCGTTGTCGTCTGATATGTGTCAATTGACTGGCTTGTGGTACTTTGATGTAAGAGGCAACAATCTGACTGGCACGATACCGGATAGCATAGGAAACTGCACCAGTTTTGAAATTCTGGATATATCCTACAACCAAATCTCGGGGGAGATTCCATACAACATCGGATTTCTTCAAGTTGCCACTTTATCATTACAGGGAAATAGGTTGAGTGGTAGGATTCCCGATGTCATTGGATTGATGCAGGCGCTTGCCGTCCTGGATCTGAGTGAGAACGAACTCGAAGGACCGATACCGCCAATACTTGGGAACTTGTCTTACACAGGAAAATTGTACTTACATGGAAACAAGCTGACCGGGCCAATTCCTCCTGAGCTGGGAAATATGTCCAAGCTTAGCTACTTGCAACTAAATGACAATCATTTGGTTGGCACAATTCCTTCTGAACTTGGGAAATTGGATCAGTTGTTTGAATTGAATCTTGCTGATAATGATCTAGAAGGGCCAATCCCTCACAACATCAGCTCTTGCACTGCATTGAATCAATTCAATGTGCATGGAAACCGTCTTAACGGATCAATCCCTCTCAGTTTCCAAGATCTGGAGAGCTTGACATATTTGAATCTTTCAGCAAACAACTTCAATGGTTGGATTCCTGTTGAGCTCGGACGCATTGTGAACCTCGATACATTGGATCTGTCTCGCAATTACTTCTCGGGTCCGGTTCCTACTTCTATTGGTGATTTGGAGCACCTTCTGAGCCTCAATTTGAGCTATAATAGACTTGTCGGGTCACTGCCAGCCGAATTTGGGAATCTCCGAAGTGTTCAGACTATTGATATGTCATTCAACAACTTCTCTGGTAGCATACCCATGGAGTTGGGTCAACTACAAAATATTATCTCATTAATTTTGAACAACAACCATTTGCAAGGGAAGATACCTGATCAGCTGACAAATTGTTTCAGTTTAGCCAATTTGAACTTGTCATACAACAACTTATCTGGTATCTTACCTCCCATGAAAAATTTCTCTCGATTTGAACAAAATAGCTTTCTCGGGAATCCGCTGCTGTGTGGAAACTGGCTGGGATCGATTTGTGGGCCTTACATGGAAAAATCTCGAGCAATGTTGTCTCGGGCAGCGGTTGTTTGTATGACGTTTGGATTCATAATGTTGTTGTTTATGGTTATAATTGCTGTGTACAAGTCGAATCCATCGAAGCAATTGATGAAGCGTTCTAGCACGACTGGGCAAGGTCCTCCAAGTCTTGTAGTACTTCATATGGATATGGCTATTCACACGTTCGAGGACATTATGAGAGTGACCGAGAATCTAAGCGAGAAGTACATTATCGGTTATGGAGCTTCGAGCACTGTGTACAAATGTTTACTGAAGAACTCCCGACCTATTGCAGTTAAGCGACTTTACAATCACTATGCACACGATTTAAGGGAGTTCGAGACCGAACTTGAAACTGTTGGTAGTATCAGACACAGAAATCTTGTTAGCCTTCATGGTTATTCATTATCTCCCTGTGGGAATCTCCTCTTCTATGACTACATGGAAAATGGTTCACTCTGGGATCTGCTTCATGGACCAGGCAAGGTTAAACTGGATTGGGACGCACGTCTGAAGATCGCGGTTGGAGCTGCACAAGGGCTTGCATATCTTCACCATGATTGTAACCCGCGAATCGTTCACCGGGACGTGAAGTCTTCGAATATTCTACTGGATGAAAATTTCGAGGCCCATCTCTCTGATTTTGGGATAGCCAAATGTATCCCAACTGGAAAAACATACACGTCTACTAGCGTGCTTGGAACGATTGGCTACATTGATCCAGAGTATGCTCGAACCTCCCGGCTTAATGAGAAGTCCGATGTTTATAGCTTCGGCATTGTTCTTCTGGAACTACTGACTGGGAAGAAGGCTGTGGATGACGAGTCCAATTTGCATCAACTGATACTATCCAAGGCTGATAACAATACTGTGATGGAAGCGGTTGATCCCGAGGTTTCGGTCACCTGCGTTGATTTAGCGCATGTTCGAAAAACGTTCCAGCTTGCTCTCCTCTGCACGAAACGCAATCCTTCTGAACGGCCAACCATGCATGAAGCTGCCCGAGTATTGATCTCCCTCCAGCCACCATCACCTACCGCGAAACATACTTCATTCCCCACGAAAACGTTGGATTATGCACAATTCTTGATTGAAAAGGGTCAGAATCGGAACCCGAAAGGGCAGGAGGAGCAGGAGAAATCAGATGCGATTTCTTTGGATGCTCGGTGGTTTGTTCGGTTCGGGGAAGTAAGTTCTGAACAACACGGTTTGAATCAATAA 2973 44.3 MKLIPFLPWPNLPMAFLFIFFFACFSPASSLPHDEGRALMSIKASFSNVANVFLDWDDDHNHDFCSWRGVFCDNVTLSVAALNLSNLNLGGEISPSIGDLSNLQSIDFQGNKLSGQIPDEIGNCGFLVHLDLSDNLLYGDIPFTVSKLKKLEFLNLKTNQLSGPIPSTLTQLPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNVLTGSLSSDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQISGEIPYNIGFLQVATLSLQGNRLSGRIPDVIGLMQALAVLDLSENELEGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLNDNHLVGTIPSELGKLDQLFELNLADNDLEGPIPHNISSCTALNQFNVHGNRLNGSIPLSFQDLESLTYLNLSANNFNGWIPVELGRIVNLDTLDLSRNYFSGPVPTSIGDLEHLLSLNLSYNRLVGSLPAEFGNLRSVQTIDMSFNNFSGSIPMELGQLQNIISLILNNNHLQGKIPDQLTNCFSLANLNLSYNNLSGILPPMKNFSRFEQNSFLGNPLLCGNWLGSICGPYMEKSRAMLSRAAVVCMTFGFIMLLFMVIIAVYKSNPSKQLMKRSSTTGQGPPSLVVLHMDMAIHTFEDIMRVTENLSEKYIIGYGASSTVYKCLLKNSRPIAVKRLYNHYAHDLREFETELETVGSIRHRNLVSLHGYSLSPCGNLLFYDYMENGSLWDLLHGPGKVKLDWDARLKIAVGAAQGLAYLHHDCNPRIVHRDVKSSNILLDENFEAHLSDFGIAKCIPTGKTYTSTSVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVDDESNLHQLILSKADNNTVMEAVDPEVSVTCVDLAHVRKTFQLALLCTKRNPSERPTMHEAARVLISLQPPSPTAKHTSFPTKTLDYAQFLIEKGQNRNPKGQEEQEKSDAISLDARWFVRFGEVSSEQHGLNQ 990
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3843920 3849627 - CmoCh19G003840.1 Cmo19g00384 403544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00384 990 SMART serkin_6 656 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g00384 990 SUPERFAMILY L domain-like 314 570 - -
Cmo19g00384 990 Pfam Leucine rich repeat N-terminal domain 33 73 IPR013210 -
Cmo19g00384 990 SUPERFAMILY Protein kinase-like (PK-like) 632 921 IPR011009 -
Cmo19g00384 990 CDD STKc_IRAK 662 924 - -
Cmo19g00384 990 ProSiteProfiles Protein kinase domain profile. 656 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g00384 990 SMART LRR_typ_2 411 435 IPR003591 -
Cmo19g00384 990 SMART LRR_typ_2 459 482 IPR003591 -
Cmo19g00384 990 SMART LRR_typ_2 339 363 IPR003591 -
Cmo19g00384 990 SMART LRR_typ_2 172 196 IPR003591 -
Cmo19g00384 990 SMART LRR_typ_2 100 124 IPR003591 -
Cmo19g00384 990 SMART LRR_typ_2 220 244 IPR003591 -
Cmo19g00384 990 SMART LRR_typ_2 291 315 IPR003591 -
Cmo19g00384 990 SMART LRR_typ_2 507 531 IPR003591 -
Cmo19g00384 990 ProSiteProfiles Leucine-rich repeat profile. 174 196 IPR001611 GO:0005515
Cmo19g00384 990 SUPERFAMILY L domain-like 33 315 - -
Cmo19g00384 990 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERL1-RELATED 26 963 - -
Cmo19g00384 990 Gene3D Ribonuclease Inhibitor 307 579 IPR032675 -
Cmo19g00384 990 ProSitePatterns Serine/Threonine protein kinases active-site signature. 776 788 IPR008271 GO:0004672|GO:0006468
Cmo19g00384 990 Gene3D Transferase(Phosphotransferase) domain 1 732 936 - -
Cmo19g00384 990 Gene3D Phosphorylase Kinase; domain 1 618 731 - -
Cmo19g00384 990 Gene3D Ribonuclease Inhibitor 32 195 IPR032675 -
Cmo19g00384 990 Gene3D Ribonuclease Inhibitor 196 306 IPR032675 -
Cmo19g00384 990 Pfam Protein kinase domain 659 918 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g00384 990 Pfam Leucine rich repeat 127 185 IPR001611 GO:0005515
Cmo19g00384 990 Pfam Leucine rich repeat 437 496 IPR001611 GO:0005515
Cmo19g00384 990 ProSitePatterns Protein kinases ATP-binding region signature. 662 684 IPR017441 GO:0005524
Cmo19g00384 990 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 26 963 - -
Cmo19g00384 990 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00366 Cmo-Chr9:1609331 Cmo19g00384 Cmo-Chr19:3843920 0 dispersed
Cmo19g00384 Cmo-Chr19:3843920 Cmo14g01912 Cmo-Chr14:14220544 4.05E-168 dispersed
Cmo19g00384 Cmo-Chr19:3843920 Cmo02g01064 Cmo-Chr2:6488469 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75097 PF00069 Pkinase 1.40E-42 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00384 K20718 - csv:101213139 1758.42