Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00389 ATGTTGGAGGATCAAGTGGCGTACTTATTGCAGAGGTACCTTGGAAATTATGTACGAGGACTCAACAAGGAGGCTCTAAAGATCAGTGTATGGCAAGTCGTTATGGTTTTGATTGAGATTTCTACTTGTTTCTGTTACTGTCTCACAGGTGATGTTGAGCTAACAAATATGCAGCTGAAGCCAGAGGCACTCAATGCATTGAAGTTGCCAGTGAAAGTTAAAGCCGGATTTCTTGGATCAGTTAAAATTAAGGGAAAGAAAGATGTTCAAGGATTGATTCTTGCAACTCCTTCTGTCTGCAAGCACTTGCCAGACCTTGTTGCTATTAGTGCATTGGGTCTGGAAGATAGCATGATGGCCTTGGTGATCTACTTGAGCTTGGAATTCAGGTTCCTGACTGAGCTGAACCTTGTAGTGGTCTTAGTTCCATGGAGCAGACTTGGTCAAGATCCTGTCATAGTGTATTTAGATCGAATTTTCTTATTAGCCGAGCCTGCTACTGAAGTTGAAGGACACAGTGAAGAGGCTATCCAAGAGGTCAAGAAAGCTAGAGTCCGGGAAATGGAAATCAAACTCTTGGAGAGGATGCAGCGAATGAAGACAGAAATGGTATGTCTACTGTATGCACTATGGATCGTTTTGGTCCCTGAATGGAGGTTGCAAGTTTTCTCTTATATGTTCTTAATCGAGTTTTCTCCACTAATTGCCAATGAATTTCGATTTGCATTGGTGAAACATTAA 741 41.84 MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQVVMVLIEISTCFCYCLTGDVELTNMQLKPEALNALKLPVKVKAGFLGSVKIKGKKDVQGLILATPSVCKHLPDLVAISALGLEDSMMALVIYLSLEFRFLTELNLVVVLVPWSRLGQDPVIVYLDRIFLLAEPATEVEGHSEEAIQEVKKARVREMEIKLLERMQRMKTEMVCLLYALWIVLVPEWRLQVFSYMFLIEFSPLIANEFRFALVKH 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4502717 4507341 + CmoCh19G003890.1 Cmo19g00389 403549

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00389 246 Pfam N-terminal region of Chorein or VPS13 48 183 IPR026854 -
Cmo19g00389 246 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 13D 3 201 - -
Cmo19g00389 246 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 3 201 IPR026847 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00389 K19525 VPS13A_C; vacuolar protein sorting-associated protein 13A/C - csv:101212417 179.874
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g580 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo03g00822 . . . . . . . . . Cmo19g00389 . . . . . . . . . . . . . Cla09g01190 Cam09g1256 Cec09g1271 . . . Cre09g1218 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015104 0 0 0 0 0 3 1 1 2 0 1 0 0 0 0 1 2 0 0 1 0 0 0 0 3 0 0 0 0 0 15
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00389 Cmo_Chr19 FPKM 26.958509 21.863039 29.046293 29.182804 29.649111 27.392738 30.667097 15.210421 16.93434 17.095087