Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00393 ATGGGCTGTTTCTTCAATTTACATCGCAAAACGAAAATTAAGAGAGGAGAAGGATCGGCTAAGGAACTGAATCAAAGGAAAAAATCGGATGGTAAAACTTCCAATCGTGGGGTTGAAGCGTTGGAAACTTTGGCTACGCCCCGGAGCATACCTGAGTTGTACAAAGAGAAGGAGCATAATCTGAGAGCCTTCACTCTCGAAGAGCTTAAAATTGCGACAAATGGGTTCAGCAGGTCCCTTAGGATCGGAGAAGGTGGCTTTGGGAGTGTATATAAGGGGAAAATAAGGCTTGAAGGTGAACAGGGAGAGGAAGTCATAGTAGCCATTAAACGGCTTAAGCCAAATAGCACACAGGGTCATAAACAATGGCTTGCAGAAGTTCAATTTCTTGGTGTTGTTAGTCATCCAAACCTTGTAAAACTTTTGGGATACTGTTCAGAAGATGGAGAAAGGGGGATCCAACGACTGTTAGTCTATGAATTCATGTCTAATGGAAGCTTAGAAGACCATCTCTTTAGCAGGAGTACTACTCTTTTGACTTGGAAAACTAGGCTACAGATTATCCTTGGTGCAGCTCAAGGATTGGCTTACCTACATGAAGGATTAGAAGTCAAGGTGATATATCGCGACTTCAAATCATCAAATGTGCTATTGGATGAAGAATTCTGTCCAAAACTTTCGGACTTTGGGCTTGCTAGAGAAGGGCCAACCGGTGATCGCACGCATGTGTCCACTGCAGTTGTTGGGACATATGGATATGCAGCACCGGAGTATGTTGTGACAGGACATCTAACAATGCAAAGTGACATATGGAGTTTTGGAGTAGTGTTGTATGAGATCCTCACGGGCAGGCGGGCTCTCGAAAGAAACATGCCAACGAGGGAGCAAAAGCTACTGGAGTGGGTCAAACAGTTTCCACCTACCAGTAAGAGTTTCAAGACAATAATAGATCTTCAACTTCAAAACCAGTATAACCTGGCAGCCGCCCGAAAAGTTGCGAATTTAGCCGATCAGTGTCTCAACAAGACTGCAAGAGAACGACCAACAATGTCGAAAGTTGTTGAAATCTTGAAGCAAGCACTAGAAGAGTCCGAGGGGAGTGTTTAG 1107 44.08 MGCFFNLHRKTKIKRGEGSAKELNQRKKSDGKTSNRGVEALETLATPRSIPELYKEKEHNLRAFTLEELKIATNGFSRSLRIGEGGFGSVYKGKIRLEGEQGEEVIVAIKRLKPNSTQGHKQWLAEVQFLGVVSHPNLVKLLGYCSEDGERGIQRLLVYEFMSNGSLEDHLFSRSTTLLTWKTRLQIILGAAQGLAYLHEGLEVKVIYRDFKSSNVLLDEEFCPKLSDFGLAREGPTGDRTHVSTAVVGTYGYAAPEYVVTGHLTMQSDIWSFGVVLYEILTGRRALERNMPTREQKLLEWVKQFPPTSKSFKTIIDLQLQNQYNLAAARKVANLADQCLNKTARERPTMSKVVEILKQALEESEGSV 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4588525 4592446 - CmoCh19G003930.1 Cmo19g00393 403553

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00393 368 MobiDBLite consensus disorder prediction 15 35 - -
Cmo19g00393 368 Pfam Protein tyrosine and serine/threonine kinase 81 357 IPR001245 GO:0004672|GO:0006468
Cmo19g00393 368 SUPERFAMILY Protein kinase-like (PK-like) 58 357 IPR011009 -
Cmo19g00393 368 CDD STKc_IRAK 82 359 - -
Cmo19g00393 368 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL20-RELATED 21 363 - -
Cmo19g00393 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Cmo19g00393 368 ProSiteProfiles Protein kinase domain profile. 76 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g00393 368 PIRSF ILK 20 366 - -
Cmo19g00393 368 Gene3D Transferase(Phosphotransferase) domain 1 162 367 - -
Cmo19g00393 368 PANTHER OS01G0588500 PROTEIN-RELATED 21 363 - -
Cmo19g00393 368 Gene3D Phosphorylase Kinase; domain 1 49 161 - -
Cmo19g00393 368 ProSitePatterns Protein kinases ATP-binding region signature. 82 110 IPR017441 GO:0005524
Cmo19g00393 368 MobiDBLite consensus disorder prediction 15 37 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00393 - - K00924 cmax:111471812 716.072
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g00851 Cmo19g00393 CCT
Cmo06g00851 Cmo19g00393 ECH
Cmo02g01622 Cmo19g00393 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01220 Cmo-Chr6:9270420 Cmo19g00393 Cmo-Chr19:4588525 8.69E-165 dispersed
Cmo07g00941 Cmo-Chr7:4509584 Cmo19g00393 Cmo-Chr19:4588525 2.35E-104 dispersed
Cmo14g01983 Cmo-Chr14:14591840 Cmo19g00393 Cmo-Chr19:4588525 1.93E-170 dispersed
Cmo16g01143 Cmo-Chr16:8164249 Cmo19g00393 Cmo-Chr19:4588525 1.19E-168 dispersed
Cmo19g00393 Cmo-Chr19:4588525 Cmo20g00436 Cmo-Chr20:2042930 1.07E-126 dispersed
Cmo19g00393 Cmo-Chr19:4588525 Cmo02g01622 Cmo-Chr2:9352986 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g575 . . Bda06g01304 . . . . . Cmo06g00851 . Cma02g01580 . Car02g01344 . . . Cpe05g00210 Bhi11g00096 . . . . Mch10g1609 . Cla10g00201 . . . . . . Cone8ag0440 Cone12ag0425 Cone6ag0626 Cone9ag0627 Lsi07g01242 . Chy04g00037 Cme06g02513 Blo03g00818 . Bda07g00128 Bda09g00691 Bpe08g00866 Bpe11g00359 . . . Cmo02g01622 Cmo19g00393 Cma06g00828 Cma16g01095 . Car16g01036 Cpe08g00701 . Bhi05g00563 . . . . . Lcy12g1885 Cla09g01197 . . . . . . . Csa03g04665 Chy06g02104 Cme04g00046
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001810 3 2 1 0 2 0 4 0 0 2 2 0 4 2 0 4 0 0 4 0 2 0 0 0 0 2 0 0 0 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75098 PF07714 PK_Tyr_Ser-Thr 5.00E-51 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00393 Cmo_Chr19 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0