Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00396 ATGACAAAGAGAACCAAGAAGGCAGGCATTGTTGGAAAATATGTAAGATTCACTGTTTTCCTTAAAGTTGCGGGAGGTGTGCTCCTGGGCACAAGGTCCAGCTGGAGCGCCTCGCCTCTCGGAAGGCGTGGCCAAGGCGCATGCCTTCCAAGAAGCATAGAGGCGCTCACTCAACATGCCTCTAGTACCCGATACGGTGCCAGTCTGAGAAAGCAGATTAAAAAGATGGAAGTCAGTCAGCACAGCAAATACTTTTGTGAGTTCTGTGGAAAGGCAAGTAGTTGTGCTCCTTTTTTGCCCAAGTTTTTCATTTCCAAGTCACTTAGTCTTCATTATGCAGTTAAGAGGAAGGCAGTTGGAATTTGGGGCTGCAAAGATTGTGGTAAAGTGAAGGCCGGAGGTGCTTACACTCTTAACACTGCTAGTGCTGTGACAGTGAGGAGCACTATTAGGAGGCTGAGAGAGCAAACTGAAAGCTAA 480 47.5 MTKRTKKAGIVGKYVRFTVFLKVAGGVLLGTRSSWSASPLGRRGQGACLPRSIEALTQHASSTRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCAPFLPKFFISKSLSLHYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4601356 4603857 + CmoCh19G003960.1 Cmo19g00396 403556

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00396 159 Gene3D - 58 159 IPR011331 GO:0003735|GO:0005840|GO:0006412
Cmo19g00396 159 PANTHER 60S RIBOSOMAL PROTEIN L37A-2 111 159 - -
Cmo19g00396 159 SUPERFAMILY Zn-binding ribosomal proteins 63 92 IPR011332 GO:0006412
Cmo19g00396 159 Pfam Ribosomal L37ae protein family 63 92 IPR002674 GO:0003735|GO:0005840|GO:0006412
Cmo19g00396 159 Pfam Ribosomal L37ae protein family 113 155 IPR002674 GO:0003735|GO:0005840|GO:0006412
Cmo19g00396 159 PANTHER 60S RIBOSOMAL PROTEIN L37A-2 41 92 - -
Cmo19g00396 159 SUPERFAMILY Zn-binding ribosomal proteins 112 149 IPR011332 GO:0006412
Cmo19g00396 159 PANTHER 60S RIBOSOMAL PROTEIN L37A 111 159 - -
Cmo19g00396 159 PANTHER 60S RIBOSOMAL PROTEIN L37A 41 92 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00396 K02921 RP-L37Ae, RPL37A; large subunit ribosomal protein L37Ae - ini:109156110 153.295
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01976 Cmo-Chr14:14557327 Cmo19g00396 Cmo-Chr19:4601356 6.44E-47 dispersed
Cmo19g00396 Cmo-Chr19:4601356 Cmo08g00980 Cmo-Chr8:6381244 3.16E-48 transposed
Cmo19g00396 Cmo-Chr19:4601356 Cmo17g00079 Cmo-Chr17:423295 3.16E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g572 . . . . . . . Bma14g00061 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00034 . . . . . . Bpe11g00293 . . . . Cmo19g00396 . . . . . . Bhi05g00568 Tan07g1907 . Lac11g2349 Hepe06g1723 . Lcy12g1883 Cla09g01201 Cam09g1269 Cec09g1283 . . . Cre09g1229 . . . Cme04g00043
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0050102 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00396 Cmo_Chr19 FPKM 0.057576 0.0 0.0 0.0 0.09941 0.140109 0.068613 0.0 0.0 0.0