Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00397 ATGCACCGGGACCGTCCTGCGTTTGGCGGCGTCGGCACCGGCGCCTCCAAGTTGGACGTCACTCCCATCGATCGGAAGCGCATCAATGAGGCTCTCGATAAGCAGCTCGACCGATCCTCGCCCTCGACTTCTCGTACCGTCATTAACGGCAAGGATAATAAGCCCTCTGCGCCTCAGTCGGTTTTAATGACGAAGCCGCCGTCTGATCAGAGAGACTCTCACTCTGCATTTCTCTCTAAGACCAACTGCTCTGGTGAGGAGTCTGAGACTGACAGTGAAGAGTCAGATGTCAGTGGATCTGATGGTGATGATATATCTTGGATTTCATGGTTTTGTAATCTGCGAGGAAATGAGTTCTTCTGTGAAGTGGATGATGACTATATACAAGATGACTTTAACCTTTGTGGGTTAAGCAGCCAAGTTCCATACTATGATTATGCTCTTGATTTGATTCTGGATGTTGAATCCTCCAATGGTGATATGTTTACAGAGGAACAGAATGAACTAATTGAATCTGCAGCTGAAATGCTTTACGGTCTAATTCATGCGAGATACATATTGACAAGTAAAGGAATGGCTGCTATGCTTGACAAGTTCAAGAATTATGACTTTGGGAGATGCCCTAGAGTTTACTGCTGTGGACAACCCTGTCTTCCTGTTGGTCAATCAGACATTCCTAGATCAGGCACCGTCAAGATATACTGTCCAAGGTGTGAGGATGTTTATTATCCTCGATCGAAGTATCAAGACATTGATGGAGCTTATTTTGGAACTACATTTTCTCACCTCTTCCTGATGACATATGGTCACCATAAGCCACAAAAAGCGGTTCAGAGCTACGTTCCAAGAGTTTTTGGGTTCAAGATCCACAAGCCATGA 879 45.39 MHRDRPAFGGVGTGASKLDVTPIDRKRINEALDKQLDRSSPSTSRTVINGKDNKPSAPQSVLMTKPPSDQRDSHSAFLSKTNCSGEESETDSEESDVSGSDGDDISWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSNGDMFTEEQNELIESAAEMLYGLIHARYILTSKGMAAMLDKFKNYDFGRCPRVYCCGQPCLPVGQSDIPRSGTVKIYCPRCEDVYYPRSKYQDIDGAYFGTTFSHLFLMTYGHHKPQKAVQSYVPRVFGFKIHKP 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4605624 4610666 - CmoCh19G003970.1 Cmo19g00397 403557

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00397 292 MobiDBLite consensus disorder prediction 35 85 - -
Cmo19g00397 292 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 99 203 IPR016149 GO:0005956|GO:0019887
Cmo19g00397 292 SMART CK_II_beta_2 106 288 IPR000704 GO:0005956|GO:0019887
Cmo19g00397 292 PANTHER CASEIN KINASE II SUBUNIT BETA 1 291 IPR000704 GO:0005956|GO:0019887
Cmo19g00397 292 SUPERFAMILY Casein kinase II beta subunit 104 291 IPR035991 GO:0005956|GO:0019887
Cmo19g00397 292 PANTHER CASEIN KINASE II SUBUNIT BETA 1 291 - -
Cmo19g00397 292 MobiDBLite consensus disorder prediction 1 101 - -
Cmo19g00397 292 ProSitePatterns Casein kinase II regulatory subunit signature. 207 238 IPR000704 GO:0005956|GO:0019887
Cmo19g00397 292 Gene3D - 204 277 - -
Cmo19g00397 292 PRINTS Casein kinase II regulatory subunit family signature 123 137 IPR000704 GO:0005956|GO:0019887
Cmo19g00397 292 PRINTS Casein kinase II regulatory subunit family signature 225 246 IPR000704 GO:0005956|GO:0019887
Cmo19g00397 292 PRINTS Casein kinase II regulatory subunit family signature 252 269 IPR000704 GO:0005956|GO:0019887
Cmo19g00397 292 PRINTS Casein kinase II regulatory subunit family signature 203 224 IPR000704 GO:0005956|GO:0019887
Cmo19g00397 292 PRINTS Casein kinase II regulatory subunit family signature 106 122 IPR000704 GO:0005956|GO:0019887
Cmo19g00397 292 PRINTS Casein kinase II regulatory subunit family signature 178 199 IPR000704 GO:0005956|GO:0019887
Cmo19g00397 292 MobiDBLite consensus disorder prediction 20 34 - -
Cmo19g00397 292 Pfam Casein kinase II regulatory subunit 106 288 IPR000704 GO:0005956|GO:0019887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00397 K03115 CSNK2B; casein kinase II subunit beta - csv:101211694 544.273
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00978 Cmo-Chr8:6369038 Cmo19g00397 Cmo-Chr19:4605624 4.72E-125 dispersed
Cmo17g00081 Cmo-Chr17:432404 Cmo19g00397 Cmo-Chr19:4605624 4.17E-155 dispersed
Cmo19g00397 Cmo-Chr19:4605624 Cmo02g01619 Cmo-Chr2:9328397 3.47E-155 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g570 . . . . . . . . . . Cma02g01578 . Car02g01342 . . . Cpe05g00212 . . . . . . . . . . . . . . Cone8ag0436 Cone12ag0421 Cone6ag0629 Cone9ag0632 . . Chy04g00032 . . Blo19g00259 . . . . . . Sed01g4060 . Cmo19g00397 . . . . . . Bhi05g00570 Tan07g1906 Cmetu04g2898 . Hepe06g1721 . Lcy12g1882 Cla09g01203 Cam09g1270 Cec09g1284 Cco09g1318 . . Cre09g1230 . Csa03g04669 . Cme04g00042
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000972 4 4 2 2 3 2 4 2 2 2 2 2 3 2 2 3 2 6 4 2 2 3 2 2 2 2 2 10 2 2 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00397 Cmo_Chr19 FPKM 0.302382 0.0 0.0 0.0 0.05377 0.039993 0.197721 0.0 0.0 0.0