Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00406 ATGGAGATCTCAGTTAAATGTCCCATTTTTGGCTGCCTATTGCTCGTGCTCTTGCCTATGCCATGCTCCTCTCAAGACAACTTTGTATACTCTAGAGCCACTTATTATGGCAGCCCTGATTGCTATGGGACACCATCTGGGGCTTGTGGATTTGGTGACTTTGGAAGGACTGTGAATGATGGCAATGTTGCTGCAGTTTCTTATCTCTATAGGAATGGTTCTGGTTGTGGTGCATGCTACCAGGTTAGGTGCACTAATCCAACATATTGCAGTGATAGTGGAGCCTATGTAGTGGTGACTGACCATGGTGAAGGGGATTACACTGACTTTATCATGAGCCCACGAGCCTTTGCAAAATTAGCTCATCCAAACACAGCCTTTGAATTGTTCTCTTATGGTGTGGTTGATGTACAATTCAGAAGGGTTTCGTGCCAATACCCTAATTACAACACGGTCAAGTTCAAGGTTCATGAGCATAGTAGGTACCCGGACTACTTGGCGATCATCATCATTTATGTCGGTGGCCAAAACGATATCACCGTCGTTGAATTGTGGCAGGAGGATTGCAATGAATGGAAAGGGATGAGGAGATCCCATGGAGCTGTTTGGGACATGGCAAACCCACCTAAAGGAGACATAAAATTGAGGTTTCAAGTGAGTGGAAGTGTGGGATATGGAAGGTGGGTGATGGTAACCAATGCTCTCCCAAGCTATTGGAAGGCAGGAATTGCTTATGATACTAACATTCACCTCTATTAA 759 44.93 MEISVKCPIFGCLLLVLLPMPCSSQDNFVYSRATYYGSPDCYGTPSGACGFGDFGRTVNDGNVAAVSYLYRNGSGCGACYQVRCTNPTYCSDSGAYVVVTDHGEGDYTDFIMSPRAFAKLAHPNTAFELFSYGVVDVQFRRVSCQYPNYNTVKFKVHEHSRYPDYLAIIIIYVGGQNDITVVELWQEDCNEWKGMRRSHGAVWDMANPPKGDIKLRFQVSGSVGYGRWVMVTNALPSYWKAGIAYDTNIHLY 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4773142 4775219 + CmoCh19G004060.1 Cmo19g00406 403566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00406 252 Pfam Expansin C-terminal domain 152 236 IPR007117 -
Cmo19g00406 252 Gene3D - 145 248 IPR036749 -
Cmo19g00406 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 247 IPR007117 -
Cmo19g00406 252 PANTHER EXPANSIN-LIKE B1 13 251 - -
Cmo19g00406 252 SUPERFAMILY PHL pollen allergen 151 246 IPR036749 -
Cmo19g00406 252 SUPERFAMILY Barwin-like endoglucanases 14 148 IPR036908 -
Cmo19g00406 252 Gene3D - 19 144 IPR036908 -
Cmo19g00406 252 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Cmo19g00406 252 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Cmo19g00406 252 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576
Cmo19g00406 252 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Cmo19g00406 252 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Cmo19g00406 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 149 IPR007112 -
Cmo19g00406 252 PANTHER EXPANSIN-B3 13 251 - -
Cmo19g00406 252 Pfam Lytic transglycolase 66 139 IPR009009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00406 Cmo-Chr19:4773142 Cmo19g00447 Cmo-Chr19:5463311 1.65E-63 dispersed
Cmo19g00406 Cmo-Chr19:4773142 Cmo02g01614 Cmo-Chr2:9295484 7.54E-169 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00406 - - csv:101215548 460.685