Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00407 ATGGGGAAGAATGGACCTTGCTGTCACTGTGGAGTTATAAGCACTCCTCTTTGGCGTAATGGACCTCCCGACAAACCGGTGTTATGCAATGCGTGTGGATCCCGATGGAGGACAAAAGGAACACTCACAAACTATACCCCGTTGCATGCTCGGACTGTTCCTGATGAATATGAAGATCACAGGGCTTCCAGGGTGAAGAGCATTTCAATAAATAAAAACAAAGAAGTAAAACTGCTGAAACGAAAGCTACAACAAGCCGATGGATCGATTGGGTGGACGCTTCCCGATCAAGGTCAGGATTACCATAGAGTAGTGGATGAAGACACAAGCAATAGGTCGAGTTCTGGATCGGCCATATCTAATCCTGAGAGTTGTGCCCATTTCAGCAGTGCAGATGCAAGTGATTTGACAGGTCCAGCTCAGTCAGTAGTGTGGGAGACGACAGTGCCTTCGAGGAAGAGGACGTGTGTGACTCGTCCAAAGCAATCCCCGGTCGAAAAACTGACTAAAGATCTATGTAGTATTTTACGAGAGCAGAGATCCTCCTATTTCTCCGAAGCTTCCGAGGATGATCTGCTTTTCGAGAGCGAAAAACCTATGGTCTCTGTTGAGATAGGCCATGGAAGCATTCTCATTAGGCATCCAAGCTCGATAGCTCGAGACGAGGAATCTGAAGCTAGCTCAGTTTCAGTTGATAACAAGCAATACTTGATAAATGATATCTATTCCCCTCATTCTGCAACTGTTCTTGTATGTAGTGAACAACAAGAACAATTTAAAAGGGATGAGTCTCGTCACGAATGCTTACAAGTTCTTGGAAACCACGACTCGCCCTTATGTGATGTAGATATAAATGACGTCGTAAACTTCGGAGAGTTTGCGAGACGGTTAACAAATGAAGAACAACAGCAACTAATGAAGTACCTACCACAGGTTGATATCGCTGAATTTCCCCAGACTCTCAAGAGTATGTTTGATAGCCCCTATTTCAAGGAGAATTTAATGTCCTTCCAACAACTGCTTAGCGAGGGCGTTTTCGATGCCTCCTTCCTTGGAACGAAGATCGAAGACTGCAAGACTCTGAGAAGGCTCGTATTATCTAATTCATCAAAATCCAAATGGGTCGAGCTCTATCAACAACTGAAGAAATGTGAAAATGGTAGCAAAGAACCTTTTTTTTCCCGTGCCAACACGTCGGTGTCGAGTAACTACATGAATGTTGATGAGAGCTACAATCAAACTATTCCAGAGGTAATGACTATCATGAAGAGTCCCAAAAGATTGGTGATGAAGGAAAATAAGGATCCTGGAGAGAATGATGGGTCTTGCTTCAGTCCTAGAAGCTTATTTGCCTTGCCATCTGATGGAAGCTACGACATGTTCGACTGCTTGCATTTTGTTGAAGAACGTTCGGATCACGGTCTATTGTTAGAGGTACGGTCGAATAGTTCGTTCCCACAAGCCGAGCTCCTTCACCCGACCTCTCATTCTGGTGGTAGGCAGGCCAGCACATGTAGTAGTTCAGTTCACCCACATCTTGTTCATCACTAA 1551 44.62 MGKNGPCCHCGVISTPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTPLHARTVPDEYEDHRASRVKSISINKNKEVKLLKRKLQQADGSIGWTLPDQGQDYHRVVDEDTSNRSSSGSAISNPESCAHFSSADASDLTGPAQSVVWETTVPSRKRTCVTRPKQSPVEKLTKDLCSILREQRSSYFSEASEDDLLFESEKPMVSVEIGHGSILIRHPSSIARDEESEASSVSVDNKQYLINDIYSPHSATVLVCSEQQEQFKRDESRHECLQVLGNHDSPLCDVDINDVVNFGEFARRLTNEEQQQLMKYLPQVDIAEFPQTLKSMFDSPYFKENLMSFQQLLSEGVFDASFLGTKIEDCKTLRRLVLSNSSKSKWVELYQQLKKCENGSKEPFFSRANTSVSSNYMNVDESYNQTIPEVMTIMKSPKRLVMKENKDPGENDGSCFSPRSLFALPSDGSYDMFDCLHFVEERSDHGLLLEVRSNSSFPQAELLHPTSHSGGRQASTCSSSVHPHLVHH 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4775225 4781508 - CmoCh19G004070.1 Cmo19g00407 403567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00407 516 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 275 387 IPR044867 -
Cmo19g00407 516 CDD ZnF_GATA 6 54 IPR000679 GO:0006355|GO:0043565
Cmo19g00407 516 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 46 - -
Cmo19g00407 516 Gene3D - 272 363 IPR038108 -
Cmo19g00407 516 Gene3D - 4 84 IPR013088 GO:0006355|GO:0008270
Cmo19g00407 516 PANTHER GATA TRANSCRIPTION FACTOR 26 254 516 - -
Cmo19g00407 516 PANTHER GATA TRANSCRIPTION FACTOR 26 1 256 - -
Cmo19g00407 516 PANTHER OSJNBB0038F03.10 PROTEIN 254 516 IPR044589 -
Cmo19g00407 516 PANTHER OSJNBB0038F03.10 PROTEIN 1 256 IPR044589 -
Cmo19g00407 516 MobiDBLite consensus disorder prediction 489 510 - -
Cmo19g00407 516 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Cmo19g00407 516 Pfam Asx homology domain 263 348 IPR028020 -
Cmo19g00407 516 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Cmo19g00407 516 MobiDBLite consensus disorder prediction 489 516 - -
Cmo19g00407 516 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00835 Cmo-Chr6:4586921 Cmo19g00407 Cmo-Chr19:4775225 0 dispersed
Cmo16g01159 Cmo-Chr16:8252858 Cmo19g00407 Cmo-Chr19:4775225 0 dispersed
Cmo19g00407 Cmo-Chr19:4775225 Cmo01g00103 Cmo-Chr1:463507 8.02E-08 dispersed
Cmo19g00407 Cmo-Chr19:4775225 Cmo02g01613 Cmo-Chr2:9274355 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11615 PF13919 ASXH 1.40E-08 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00407 - - cmax:111470531 1015.37