Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00407 ATGGGGAAGAATGGACCTTGCTGTCACTGTGGAGTTATAAGCACTCCTCTTTGGCGTAATGGACCTCCCGACAAACCGGTGTTATGCAATGCGTGTGGATCCCGATGGAGGACAAAAGGAACACTCACAAACTATACCCCGTTGCATGCTCGGACTGTTCCTGATGAATATGAAGATCACAGGGCTTCCAGGGTGAAGAGCATTTCAATAAATAAAAACAAAGAAGTAAAACTGCTGAAACGAAAGCTACAACAAGCCGATGGATCGATTGGGTGGACGCTTCCCGATCAAGGTCAGGATTACCATAGAGTAGTGGATGAAGACACAAGCAATAGGTCGAGTTCTGGATCGGCCATATCTAATCCTGAGAGTTGTGCCCATTTCAGCAGTGCAGATGCAAGTGATTTGACAGGTCCAGCTCAGTCAGTAGTGTGGGAGACGACAGTGCCTTCGAGGAAGAGGACGTGTGTGACTCGTCCAAAGCAATCCCCGGTCGAAAAACTGACTAAAGATCTATGTAGTATTTTACGAGAGCAGAGATCCTCCTATTTCTCCGAAGCTTCCGAGGATGATCTGCTTTTCGAGAGCGAAAAACCTATGGTCTCTGTTGAGATAGGCCATGGAAGCATTCTCATTAGGCATCCAAGCTCGATAGCTCGAGACGAGGAATCTGAAGCTAGCTCAGTTTCAGTTGATAACAAGCAATACTTGATAAATGATATCTATTCCCCTCATTCTGCAACTGTTCTTGTATGTAGTGAACAACAAGAACAATTTAAAAGGGATGAGTCTCGTCACGAATGCTTACAAGTTCTTGGAAACCACGACTCGCCCTTATGTGATGTAGATATAAATGACGTCGTAAACTTCGGAGAGTTTGCGAGACGGTTAACAAATGAAGAACAACAGCAACTAATGAAGTACCTACCACAGGTTGATATCGCTGAATTTCCCCAGACTCTCAAGAGTATGTTTGATAGCCCCTATTTCAAGGAGAATTTAATGTCCTTCCAACAACTGCTTAGCGAGGGCGTTTTCGATGCCTCCTTCCTTGGAACGAAGATCGAAGACTGCAAGACTCTGAGAAGGCTCGTATTATCTAATTCATCAAAATCCAAATGGGTCGAGCTCTATCAACAACTGAAGAAATGTGAAAATGGTAGCAAAGAACCTTTTTTTTCCCGTGCCAACACGTCGGTGTCGAGTAACTACATGAATGTTGATGAGAGCTACAATCAAACTATTCCAGAGGTAATGACTATCATGAAGAGTCCCAAAAGATTGGTGATGAAGGAAAATAAGGATCCTGGAGAGAATGATGGGTCTTGCTTCAGTCCTAGAAGCTTATTTGCCTTGCCATCTGATGGAAGCTACGACATGTTCGACTGCTTGCATTTTGTTGAAGAACGTTCGGATCACGGTCTATTGTTAGAGGTACGGTCGAATAGTTCGTTCCCACAAGCCGAGCTCCTTCACCCGACCTCTCATTCTGGTGGTAGGCAGGCCAGCACATGTAGTAGTTCAGTTCACCCACATCTTGTTCATCACTAA 1551 44.62 MGKNGPCCHCGVISTPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTPLHARTVPDEYEDHRASRVKSISINKNKEVKLLKRKLQQADGSIGWTLPDQGQDYHRVVDEDTSNRSSSGSAISNPESCAHFSSADASDLTGPAQSVVWETTVPSRKRTCVTRPKQSPVEKLTKDLCSILREQRSSYFSEASEDDLLFESEKPMVSVEIGHGSILIRHPSSIARDEESEASSVSVDNKQYLINDIYSPHSATVLVCSEQQEQFKRDESRHECLQVLGNHDSPLCDVDINDVVNFGEFARRLTNEEQQQLMKYLPQVDIAEFPQTLKSMFDSPYFKENLMSFQQLLSEGVFDASFLGTKIEDCKTLRRLVLSNSSKSKWVELYQQLKKCENGSKEPFFSRANTSVSSNYMNVDESYNQTIPEVMTIMKSPKRLVMKENKDPGENDGSCFSPRSLFALPSDGSYDMFDCLHFVEERSDHGLLLEVRSNSSFPQAELLHPTSHSGGRQASTCSSSVHPHLVHH 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4775225 4781508 - CmoCh19G004070.1 Cmo19g00407 403567

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00407 516 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 275 387 IPR044867 -
Cmo19g00407 516 CDD ZnF_GATA 6 54 IPR000679 GO:0006355|GO:0043565
Cmo19g00407 516 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 46 - -
Cmo19g00407 516 Gene3D - 272 363 IPR038108 -
Cmo19g00407 516 Gene3D - 4 84 IPR013088 GO:0006355|GO:0008270
Cmo19g00407 516 PANTHER GATA TRANSCRIPTION FACTOR 26 254 516 - -
Cmo19g00407 516 PANTHER GATA TRANSCRIPTION FACTOR 26 1 256 - -
Cmo19g00407 516 PANTHER OSJNBB0038F03.10 PROTEIN 254 516 IPR044589 -
Cmo19g00407 516 PANTHER OSJNBB0038F03.10 PROTEIN 1 256 IPR044589 -
Cmo19g00407 516 MobiDBLite consensus disorder prediction 489 510 - -
Cmo19g00407 516 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Cmo19g00407 516 Pfam Asx homology domain 263 348 IPR028020 -
Cmo19g00407 516 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Cmo19g00407 516 MobiDBLite consensus disorder prediction 489 516 - -
Cmo19g00407 516 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00407 - - - cmax:111470531 1015.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00835 Cmo-Chr6:4586921 Cmo19g00407 Cmo-Chr19:4775225 0 dispersed
Cmo16g01159 Cmo-Chr16:8252858 Cmo19g00407 Cmo-Chr19:4775225 0 dispersed
Cmo19g00407 Cmo-Chr19:4775225 Cmo01g00103 Cmo-Chr1:463507 8.02E-08 dispersed
Cmo19g00407 Cmo-Chr19:4775225 Cmo02g01613 Cmo-Chr2:9274355 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo05g00609 CCT,CST,ECH 78 342 C2C2-Gata Transcription Factor Family AT5G25830 54.3 1.5e-63 240.7
Cmo16g00703 . 28 305 C2C2-Gata Transcription Factor Family AT5G66320 51.4 2.0e-63 240.4
Cmo03g00730 . 98 281 C2C2-Gata Transcription Factor Family AT5G66320 50.5 7.8e-44 175.3
Cmo09g00615 CCT,ECH 34 289 C2C2-Gata Transcription Factor Family AT4G32890 50.6 1.5e-54 210.7
Cmo06g00835 . 1 489 C2C2-Gata Transcription Factor Family AT4G17570 53.8 8.0e-133 471.5
Cmo16g01159 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 52.2 1.4e-132 470.7
Cmo19g00407 . 1 492 C2C2-Gata Transcription Factor Family AT4G17570 51.3 3.0e-127 453.0
Cmo02g01613 . 643 1070 C2C2-Gata Transcription Factor Family AT4G17570 51.5 1.1e-110 397.9
Cmo06g00835 . 1 490 C2C2-Gata Transcription Factor Family AT5G47140 50.4 2.2e-113 406.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001256 2 2 1 2 3 2 5 2 2 2 2 2 4 2 1 4 2 3 4 2 2 2 2 2 2 2 2 7 3 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11615 PF13919 ASXH 1.40E-08 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00407 Cmo_Chr19 FPKM 18.385359 19.180737 2.117468 1.252615 11.359892 13.397749 10.945063 0.0 0.0 0.0