Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00456 ATGGATATTCTTAAGATATTGGTGTTTGTAATATTTGGTGTGTTTTTGTATGGAATTGAAAGCTTAGGCGATGATGGACTTTTGGTTTTTGACTACTACAAAGAAACATGCCCCTTTGTTGAAGATATTATCCGACGACAAGTCGAGATTGCCGTGCTCAAAGATCCTCGAATGGCTGCTTCACTCCTTCGCTTGCATTTCCATGATTGTTTTGTTATGGGATGTGATGCATCAATTCTTCTAGATAGTAATGATGAGATGGTGAGCGAAAAACAAGCGGCTCCAAATTTGAACTCCCTTCGTGGTTTCGATGTTATTGATGAGATAAAATACATATTGGAAGATGCTTGTCCTTACACTGTGTCTTGTGCTGATATCTTAACCATTGCTGCTCGTGATGCTGTTGAGCTCAGAGGAGGACCTGGATGGCAAGTGCTGTTGGGGAGGAAGGACTCTCTGAAAGCGAGCTTTGATGGAGCCAACAAATACATTCCTTCTCCCAATTCCTCTCTTGAGACCCTAATTGCCAATTTTCATGAACAGGGCCTTGATGTTTATGACTTAGTTGCCCTATCAGGAAGCCACACCATAGGGAAAGCAAGATGCTTGAGCTTCAGGCAAAGAGCATACCAAACGAGCCCGGAAGAAGAATACGACAGATACGAGAGATACAACACTTACCGAAGAGTCCTGAGGTCCATATGCCCTGAAACAGGGCAAGACCAGAGGGTAGCGCCCTTAGACTTTAGGACACCGGCAAGGTTTGACAACCACTATTTCCTCAACATTCTTGAAGGGAAAGCCCTTTTGGGGTCCGACAATGTGCTCATAACCCAAGACCATGAAGGTGAGATCACAAGACAAGTTTGGAGCTATGCCTCTGACCAAACCCTTTTCTTTGCTTCCTTTGTTAAGTCCATTGTCAAGATGGGGAACATCAACGTCCTCACTGCCAATCTCGGTGAAGTCCGAACCAATTGTAGGTTTACCAATCACTAG 999 44.14 MDILKILVFVIFGVFLYGIESLGDDGLLVFDYYKETCPFVEDIIRRQVEIAVLKDPRMAASLLRLHFHDCFVMGCDASILLDSNDEMVSEKQAAPNLNSLRGFDVIDEIKYILEDACPYTVSCADILTIAARDAVELRGGPGWQVLLGRKDSLKASFDGANKYIPSPNSSLETLIANFHEQGLDVYDLVALSGSHTIGKARCLSFRQRAYQTSPEEEYDRYERYNTYRRVLRSICPETGQDQRVAPLDFRTPARFDNHYFLNILEGKALLGSDNVLITQDHEGEITRQVWSYASDQTLFFASFVKSIVKMGNINVLTANLGEVRTNCRFTNH 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5523601 5525944 + CmoCh19G004560.1 Cmo19g00456 403616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00456 332 Pfam Peroxidase 45 286 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo19g00456 332 Gene3D - 32 331 - -
Cmo19g00456 332 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo19g00456 332 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo19g00456 332 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo19g00456 332 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo19g00456 332 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo19g00456 332 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo19g00456 332 PRINTS Plant peroxidase signature 246 261 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo19g00456 332 PRINTS Plant peroxidase signature 262 279 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo19g00456 332 PRINTS Plant peroxidase signature 305 318 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo19g00456 332 ProSiteProfiles Plant heme peroxidase family profile. 27 331 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo19g00456 332 SUPERFAMILY Heme-dependent peroxidases 29 331 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cmo19g00456 332 CDD secretory_peroxidase 28 330 IPR033905 GO:0004601|GO:0042744
Cmo19g00456 332 PANTHER PEROXIDASE 20 5 330 - -
Cmo19g00456 332 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo19g00456 332 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo19g00456 332 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo19g00456 332 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo19g00456 332 PRINTS Haem peroxidase superfamily signature 248 263 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo19g00456 332 PANTHER PEROXIDASE 72-RELATED 5 330 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo19g00456 332 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601
Cmo19g00456 332 ProSitePatterns Peroxidases proximal heme-ligand signature. 187 197 IPR019793 -
Cmo19g00456 332 Gene3D Peroxidase, domain 2 165 311 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00821 Cmo-Chr4:4084751 Cmo19g00456 Cmo-Chr19:5523601 2.72E-96 dispersed
Cmo04g01634 Cmo-Chr4:8353182 Cmo19g00456 Cmo-Chr19:5523601 4.44E-97 dispersed
Cmo08g01253 Cmo-Chr8:7912858 Cmo19g00456 Cmo-Chr19:5523601 7.83E-95 dispersed
Cmo16g00691 Cmo-Chr16:3419492 Cmo19g00456 Cmo-Chr19:5523601 9.77E-68 dispersed
Cmo19g00456 Cmo-Chr19:5523601 Cmo01g00746 Cmo-Chr1:3874647 6.64E-100 dispersed
Cmo19g00456 Cmo-Chr19:5523601 Cmo03g00743 Cmo-Chr3:6291134 5.71E-97 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00456 K00430 - csv:116402797 551.592