Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00460 ATGGCTACGTTTTATCTCTCTACGGGAGTGCCACTACTGAAATCTGATTCTACCAGAGTTGCTGACCACCTTGCATCGTGTAGAAACGTTTCTGATGCGTTTGGTATTGAAGCGAAGACTGGAAGGATGTATGTGCAATCGAAACAAATCGCTTTGATTAGATGCTCGAGAATAGCCGAGAAGCAGGATGTTGCGTCGTATAAAGGCTCTCTGGACACTGATCAGGACATTTCGAACTCTACCCTTGATCATCAATCTAATGGATTCCCTCTTAGTAGGATGAAGTTAACCACGAAATCTAGAAGGAAAACTAAGATAGTCTGCACCATTGGTCCTTCCACAAGTTCACGTGAAATGATATGGAAATTGGCAGAGATGGGTATGAATGTGGCACGTTTAAACATGTCCCATGGTGATCATTCTACCCACCAGAAAACCATTGATTTGGTTAAGGAATATAACGCACAATTTAAAGACAAAGTTATAGCCATTATGCTTGACACAAAGGGCCCTGAGGTTCGAAGTGGAGATGTACCTAAACCAATCTTGCTCAAAGATGGACAAGAATTTAACTTCACAATCAAAAGAGGAGTCAGCACAGAAGACACTGTTAGTGTTAACTATGACGACTTTATAAATGATGTAGAAGTTGGCGATAGTGTGCTTGTTGATGGTGGAATGATGTCATTGACTGTTAAGTCGAAGACAAATGATTTGGTTAAGTGTGTAGTCGTTGATGGCGGCGAACTCAAATCAAGGCGCCATTTGAATGTTCGTGGAAAAAGTGCGACATTGCCTTCTATAACAGACAAGGACTGGGATGATATAAAGTTTGGGGTGGATAATCAGGTTGATTTTTATGCTGTTTCTTTTGTAAAGGATGCTAGAGTGGTCCATGAGCTGAAAGACTATCTGAAAAGCTGTAATGCAGATATTCATGTGATTGTAAAAATTGAAAGTGCAGACTCAATACCTAATCTTCATTCAATACTTTCAGCATCAGATGGGGCAATGGTAGCTCGTGGAGACCTTGGGGCTGAACTTCCAATCGAGGAAGTTCCTTTATTGCAGGAAACTATTATCAAAAGGTGTCAGAGCATGCAGAAAACAGTTATTGTAGCAACAAACATGCTGGAAAGCATGATTGATCATCCCACACCAACTAGAGCTGAGGTTTCTGATATTTCTATTGCAGTACGAGAAGGTGCTGATGCAATCATGCTTTCAGGAGAAACTGCTCATGGAAAGTATCCATTGAAGGCTGTGAACGTGATGCACACCGTGGCTTTGAGGATGGAATCTAGTCTTCCAGTTAATTCTACTACTCCAAATCCATTGAGTGTCCACAAGTCCGCATATGTTCCTTCTATGATGTTGTTGGGACATGGGATGAAGGCAATTGTTCTGCCTAAATGGAGACATATGGGAGACATGCTTGCTTTCCATACCACCACTATGGCCAACACCCTTAAGACTCCTATCATCGTTTTCACGAGAACTGGCTCCATGGCTATACTCTTGAGTCATTACAGGCCCTGCTCTACTATCTTTGCCTTCACTGACGACGATAGGATCAAACAAAGGCTGGTGCTTTATCATGGGGTCATGCCCATTTACATGCAGTTTTCAAGTGATGCAGAAGAGACGTTCTCCAGAGCACTCGAGTTATTGCTGGATAAGGGTCACGTGGTAGATGGAGACCACGTTACGCTTGTACAAAGTGGAGCTCAACCAATATGGCGGAAAGAATCTATTCACCACATTCAAGTACGTAGGATCCTAGGTTGA 1788 42.39 MATFYLSTGVPLLKSDSTRVADHLASCRNVSDAFGIEAKTGRMYVQSKQIALIRCSRIAEKQDVASYKGSLDTDQDISNSTLDHQSNGFPLSRMKLTTKSRRKTKIVCTIGPSTSSREMIWKLAEMGMNVARLNMSHGDHSTHQKTIDLVKEYNAQFKDKVIAIMLDTKGPEVRSGDVPKPILLKDGQEFNFTIKRGVSTEDTVSVNYDDFINDVEVGDSVLVDGGMMSLTVKSKTNDLVKCVVVDGGELKSRRHLNVRGKSATLPSITDKDWDDIKFGVDNQVDFYAVSFVKDARVVHELKDYLKSCNADIHVIVKIESADSIPNLHSILSASDGAMVARGDLGAELPIEEVPLLQETIIKRCQSMQKTVIVATNMLESMIDHPTPTRAEVSDISIAVREGADAIMLSGETAHGKYPLKAVNVMHTVALRMESSLPVNSTTPNPLSVHKSAYVPSMMLLGHGMKAIVLPKWRHMGDMLAFHTTTMANTLKTPIIVFTRTGSMAILLSHYRPCSTIFAFTDDDRIKQRLVLYHGVMPIYMQFSSDAEETFSRALELLLDKGHVVDGDHVTLVQSGAQPIWRKESIHHIQVRRILG 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5546173 5555044 + CmoCh19G004600.1 Cmo19g00460 403620

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00460 595 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 100 436 IPR015813 GO:0003824
Cmo19g00460 595 Gene3D - 468 593 IPR036918 -
Cmo19g00460 595 Gene3D - 172 265 IPR015806 GO:0004743|GO:0006096
Cmo19g00460 595 Pfam Pyruvate kinase, alpha/beta domain 483 573 IPR015795 -
Cmo19g00460 595 ProSitePatterns Pyruvate kinase active site signature. 312 324 IPR018209 GO:0004743|GO:0006096
Cmo19g00460 595 SUPERFAMILY PK beta-barrel domain-like 171 262 IPR011037 -
Cmo19g00460 595 PRINTS Pyruvate kinase family signature 341 365 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo19g00460 595 PRINTS Pyruvate kinase family signature 160 176 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo19g00460 595 PRINTS Pyruvate kinase family signature 284 298 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo19g00460 595 PRINTS Pyruvate kinase family signature 366 390 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo19g00460 595 PRINTS Pyruvate kinase family signature 410 426 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo19g00460 595 PRINTS Pyruvate kinase family signature 314 340 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo19g00460 595 PRINTS Pyruvate kinase family signature 391 409 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo19g00460 595 TIGRFAM pyruv_kin: pyruvate kinase 102 590 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo19g00460 595 Gene3D - 104 429 IPR040442 -
Cmo19g00460 595 PANTHER PYRUVATE KINASE 45 593 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo19g00460 595 PANTHER PLASTIDIAL PYRUVATE KINASE 3, CHLOROPLASTIC 45 593 - -
Cmo19g00460 595 SUPERFAMILY PK C-terminal domain-like 420 590 IPR036918 -
Cmo19g00460 595 Pfam Pyruvate kinase, barrel domain 102 438 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00460 K00873 PK, pyk; pyruvate kinase [EC:2.7.1.40] - csv:116403524 887.486
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00089 Cmo-Chr16:408675 Cmo19g00460 Cmo-Chr19:5546173 0 dispersed
Cmo17g00193 Cmo-Chr17:1149094 Cmo19g00460 Cmo-Chr19:5546173 1.23E-117 dispersed
Cmo18g00824 Cmo-Chr18:9634155 Cmo19g00460 Cmo-Chr19:5546173 9.26E-82 dispersed
Cmo18g01319 Cmo-Chr18:12557293 Cmo19g00460 Cmo-Chr19:5546173 0 dispersed
Cmo19g00460 Cmo-Chr19:5546173 Cmo20g00006 Cmo-Chr20:99289 6.75E-84 dispersed
Cmo19g00460 Cmo-Chr19:5546173 Cmo02g01639 Cmo-Chr2:9445282 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g659 . Blo03g00059 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda07g00775 . . . . . . . Cmo19g00460 . . . . . Cpe15g00346 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001502 3 1 2 2 2 2 4 2 2 2 2 2 3 3 2 4 2 4 4 2 2 2 2 2 2 2 2 3 3 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00460 Cmo_Chr19 FPKM 6.41152 7.05795 8.898606 8.302252 3.717789 3.540804 4.131164 10.776169 10.339749 10.681767