Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00470 ATGATGATATGGAAGAAAAGAAAAAAAAGGAGCAAAAAGCAGTTTTTAGATGAGGCAGTCACTGCCCACCATCCATCGAAGATAAAGCAATGTCATCGTCTTTTAATCTTTGCTGGTAGCAGAGGCAAAGCAAAACAGAGGAGCAAGAAGAAGAAAACAGAGCAAATTAAACAAAGAAAACTATGGCGCTTAGAATGTGGGCTTCTTCTACTGCTAATGCACTCAGACTTTCATCTGCATCTAAAACCCATCTCTCTTCTCCATTCTCTCTCTCCAGATGCTTTTCCACCGGTAATTTTTGCTCTTTTCTTCTTTGCCTGCAAACTTGTTGTTTGGTTGTTGATTTTGGATGGACTGAAGTATGCTTCTTCTCATGAGTGGGTGAAGCATGAGGGTGAGGTTGCTACTGTTGGCATCACTGACCATGCTCAGGACCATCTGGGAGAAGTGGTGTTTGTGGATCTGCCAGAATCAGGTGGTTCAGTTTCTCAAGGTAAGAGCTTTGGAGCAGTGGAAAGTGTAAAAGCAACAAGTGATATCAACTCCCCAATCTCTGGTGAAATTGTTGAAGTTAACCCACAGCTTAAGGATTCTCCTGGTTTGATCAATTCAAGTCCATATGAAGGGGGATGGATGATAAAAGTGAAGCCAAGCAATCCAGCTGAATTGGATTCCTTGTTTGGTCCAAAGGAATATACAAAGCATTGTGAGGAAGAAGATGCAGCCCACTAG 732 42.21 MMIWKKRKKRSKKQFLDEAVTAHHPSKIKQCHRLLIFAGSRGKAKQRSKKKKTEQIKQRKLWRLECGLLLLLMHSDFHLHLKPISLLHSLSPDAFPPVIFALFFFACKLVVWLLILDGLKYASSHEWVKHEGEVATVGITDHAQDHLGEVVFVDLPESGGSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKDSPGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKHCEEEDAAH 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5625026 5628359 + CmoCh19G004700.1 Cmo19g00470 403630

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00470 243 CDD GCS_H 121 215 IPR033753 -
Cmo19g00470 243 PANTHER GLYCINE CLEAVAGE SYSTEM H PROTEIN 114 243 IPR002930 GO:0005960|GO:0019464
Cmo19g00470 243 Hamap Glycine cleavage system H protein [gcvH]. 116 237 IPR002930 GO:0005960|GO:0019464
Cmo19g00470 243 Pfam Glycine cleavage H-protein 119 238 IPR033753 -
Cmo19g00470 243 PANTHER GLYCINE CLEAVAGE SYSTEM H PROTEIN 114 243 - -
Cmo19g00470 243 SUPERFAMILY Single hybrid motif 115 238 IPR011053 -
Cmo19g00470 243 Gene3D - 114 243 - -
Cmo19g00470 243 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 159 188 IPR003016 -
Cmo19g00470 243 TIGRFAM gcvH: glycine cleavage system H protein 118 240 IPR017453 GO:0005960|GO:0019464
Cmo19g00470 243 ProSiteProfiles Biotinyl/lipoyl domain profile. 134 216 IPR000089 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00470 K02437 gcvH, GCSH; glycine cleavage system H protein - csv:101222346 252.677
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00456 Cmo-Chr13:5623806 Cmo19g00470 Cmo-Chr19:5625026 1.31E-56 dispersed
Cmo19g00470 Cmo-Chr19:5625026 Cmo02g01641 Cmo-Chr2:9463008 9.14E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g655 . . . . . . . . . . Cma02g01600 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo19g00470 . . . . . Cpe15g00350 . . . . . . . Cla09g01154 Cam09g1214 Cec09g1236 Cco09g1257 . . Cre09g1175 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001731 4 1 2 1 2 2 2 2 2 2 2 2 3 2 2 3 2 6 2 2 2 2 2 2 2 2 2 4 2 3 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00470 Cmo_Chr19 FPKM 37.573513 40.664078 19.899345 21.559977 29.985857 25.224476 31.563925 51.106564 50.099808 58.937191