Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00475 ATGGATGCTACCTTCAAGCAAAACCCACTTCCATCTCCCGTCATAGACACTGTCAACGAAATCACTAGAATTTTCCGATCACTTCCGGCCAGACCCTCCATAGAAGAGGTCGAAGCAGCCGTGGCGATTCTCAATACTGTTCAGAACGACGAGGATTTCAAATTGGGGGAAATTTCAAAGCAGGAAGTCCCTCAAAATGTCCCTGAACAGCTCTTCTCTATTTTGCAGCAGATGAGGAAGATGATGGTGTTGTTCGAGAGGCATGAACAGAGGCGAGAGGCCGTTCGTTTGATTGAGATCGATAAGATGCTGAAAACCTTCGATGAACTTATTCTGAGAGCTTCTGATTTGGTTTCTGGCGATTCTCAGGGCCAGAGGGATCTGAATTTGAGTGATCCAGTTGAGAAAATTGCAAAGGAGATGGTAATCAGTGATCAAAATTTGGAGAAGAATAGGGGAGATGAAGAATTTGAAAGCAATGGAAATAAGGATTTGGTTAAGAATTCTTCATTCATTCCTCCATTATCTTCTTCAGGTGAAGGAGAAACTGAAAAACTGAGTTTAATGAAAGTTGCTGATCTTATTGAAAACATTGCTAAAAGTGGGTTAACTGTTCTAAATCTGAAGGGAAAGTTGATGGATAATATGGAATTTCTTCCAATTTCCATTGGCAAGTTATCTGTTCTTGTTGAATTAGACCTATCAGAAAACAAAATCATGGCACTTCCACCAGAACTAAGTAGCCTTAGATTGTTAACAAAGTTTGTCATTCACTCCAACCAATTAATAAACCTTCCCGGCACGTTCGGGGAGCTTGTAAACCTCACCATCGTCGACCTGCACGCAAACAGGCTAAAATCACTGCCAGCTTCTTTTGGGAACCTGAAAAACCTTATTTCTCTCAACTTGAGTTCGAACCTTTTCGCCCATTTACCAGAAATCATTGGATCATTGACTAGTTTAAAGATGTTAAACGTAGAAACCAATGAGCTCGAGGACTTACCTTACACAATCGGATCATGTTCGTCACTTGTCGAGCTACGACTTGACTTTAACGAGATAAAATCTCTTCCCGAGGCCATCGGAAAGCTCAAATCCTTAGAGATTCTCACCCTGCATTACAATAGAATCAGAGGACTTCCCACTACAATAGGAAATCTCCCCAAGTTAAGGGAACTAGACATTAGCTTCAACGAACTGAAAACGATCCCCGAAAATCTGTGTTTCGCTGTTAGCCTCCGAAAGCTGAACATCGGCAAGAACTTCGCCGACCTGACAGCGTTACCGAGATCGATCGGGAACCTGGAGATGCTCGAGGAGCTTGACATAAGTGCAGACCAGATACGATTCCTGCCGGAGTCTTTCAGGTTCTTATCGAAATTGAGAGTTCTCCAAGCGGATGAAACGCCATTAGAAGAACCACCAAGAGAAGTTATTGAATTGGGTGCTCAGGTAAAGCAAAAACACATCAGTTTTGAAGTCATAATTAATCCATCATTCAAATTTGAAGTTTGTTTATGTCAGGCTGTTGTGAAGTTCATGGCTGATGCAGTGGAAAAAGGGGACTTCAAATCTGAGGCAACAGAAGAGAAGGGGTTTTGGTTATGGTTTTGTTCATTATGTTGCTCCAAAACAAGTGATACGCCTCATCACAGGTTATCTACTGAATTACAGCTTTGA 1680 41.9 MDATFKQNPLPSPVIDTVNEITRIFRSLPARPSIEEVEAAVAILNTVQNDEDFKLGEISKQEVPQNVPEQLFSILQQMRKMMVLFERHEQRREAVRLIEIDKMLKTFDELILRASDLVSGDSQGQRDLNLSDPVEKIAKEMVISDQNLEKNRGDEEFESNGNKDLVKNSSFIPPLSSSGEGETEKLSLMKVADLIENIAKSGLTVLNLKGKLMDNMEFLPISIGKLSVLVELDLSENKIMALPPELSSLRLLTKFVIHSNQLINLPGTFGELVNLTIVDLHANRLKSLPASFGNLKNLISLNLSSNLFAHLPEIIGSLTSLKMLNVETNELEDLPYTIGSCSSLVELRLDFNEIKSLPEAIGKLKSLEILTLHYNRIRGLPTTIGNLPKLRELDISFNELKTIPENLCFAVSLRKLNIGKNFADLTALPRSIGNLEMLEELDISADQIRFLPESFRFLSKLRVLQADETPLEEPPREVIELGAQVKQKHISFEVIINPSFKFEVCLCQAVVKFMADAVEKGDFKSEATEEKGFWLWFCSLCCSKTSDTPHHRLSTELQL 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5675457 5678228 + CmoCh19G004750.1 Cmo19g00475 403635

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00475 559 SUPERFAMILY L domain-like 201 475 - -
Cmo19g00475 559 SMART LRR_typ_2 295 317 IPR003591 -
Cmo19g00475 559 SMART LRR_typ_2 272 294 IPR003591 -
Cmo19g00475 559 SMART LRR_typ_2 364 386 IPR003591 -
Cmo19g00475 559 SMART LRR_typ_2 387 410 IPR003591 -
Cmo19g00475 559 SMART LRR_typ_2 342 363 IPR003591 -
Cmo19g00475 559 SMART LRR_typ_2 318 341 IPR003591 -
Cmo19g00475 559 SMART LRR_typ_2 226 249 IPR003591 -
Cmo19g00475 559 SMART LRR_typ_2 435 457 IPR003591 -
Cmo19g00475 559 ProSiteProfiles Leucine-rich repeat profile. 297 318 IPR001611 GO:0005515
Cmo19g00475 559 Pfam Leucine rich repeat 274 331 IPR001611 GO:0005515
Cmo19g00475 559 Pfam Leucine rich repeat 343 400 IPR001611 GO:0005515
Cmo19g00475 559 Gene3D Ribonuclease Inhibitor 177 494 IPR032675 -
Cmo19g00475 559 ProSiteProfiles Leucine-rich repeat profile. 389 410 IPR001611 GO:0005515
Cmo19g00475 559 PANTHER LEUCINE-RICH REPEAT-CONTAINING 14 487 - -
Cmo19g00475 559 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 5 14 487 - -
Cmo19g00475 559 SMART LRR_bac_2 410 431 - -
Cmo19g00475 559 SMART LRR_bac_2 295 314 - -
Cmo19g00475 559 SMART LRR_bac_2 341 360 - -
Cmo19g00475 559 SMART LRR_bac_2 364 383 - -
Cmo19g00475 559 SMART LRR_bac_2 387 406 - -
Cmo19g00475 559 SMART LRR_bac_2 272 291 - -
Cmo19g00475 559 SMART LRR_bac_2 318 337 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00475 - - - csv:101205841 866.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00373 Cmo-Chr7:1711912 Cmo19g00475 Cmo-Chr19:5675457 2.50E-136 dispersed
Cmo18g00769 Cmo-Chr18:9285299 Cmo19g00475 Cmo-Chr19:5675457 1.88E-43 dispersed
Cmo19g00475 Cmo-Chr19:5675457 Cmo16g00848 Cmo-Chr16:4472682 7.21E-07 dispersed
Cmo19g00475 Cmo-Chr19:5675457 Cmo02g01646 Cmo-Chr2:9486278 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g647 . . . . . . Bma07g00954 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda07g00105 . . . . . . . Cmo19g00475 . . . . . Cpe15g00356 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006201 2 1 3 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00475 Cmo_Chr19 FPKM 0.0 0.0 0.0 0.441127 37.225262 32.870689 40.733101 1.309417 1.074571 1.315298