Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00476 ATGCCACCGGTTCCTCTTGCACCATATCCAACACCTCCTGCACCTTATTCACAGCCTGCTAATGCCACACAGAGCCAGCTTGTGTGCTCAGGATGTAGAAACCTTTTACTTTATCCTGTTGGGGCAACCTCTGTTTGCTGTGCAGTTTGTAATGCAGTCACTGCCGTTCCACCTCCTGGCACAGAAATGGCACAATTGGTGTGTGGAGGCTGCCATACTCTTCTCATGTACATCCGCGGTGCCACGAGCGTACAATGCTCTTGTTGCCACACCGTCAACTTAGCTTTGGAAGCAAATCAGGTGGCACACGTTAGCTGCGGGAACTGCAGGATGCTACTGATGTATCAGTATGGAGCACGCTCAGTGAAATGTGCAGTATGCAATTTTGTGACATCAATTGGTATGACAACAAGTGCGATCGATCAAAAAGCTTAA 435 48.74 MPPVPLAPYPTPPAPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSIGMTTSAIDQKA 144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5686831 5689325 + CmoCh19G004760.1 Cmo19g00476 403636

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00476 144 PANTHER PROTEIN LSD1 3 141 IPR040319 -
Cmo19g00476 144 Pfam LSD1 zinc finger 29 53 IPR005735 -
Cmo19g00476 144 Pfam LSD1 zinc finger 68 92 IPR005735 -
Cmo19g00476 144 Pfam LSD1 zinc finger 106 130 IPR005735 -
Cmo19g00476 144 PANTHER PROTEIN LOL1 3 141 - -
Cmo19g00476 144 SUPERFAMILY Multiheme cytochromes 29 127 IPR036280 -
Cmo19g00476 144 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 103 132 IPR005735 -
Cmo19g00476 144 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 26 56 IPR005735 -
Cmo19g00476 144 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 65 94 IPR005735 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00476 - - - csv:101221483 271.166
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00038 Cmo-Chr7:264138 Cmo19g00476 Cmo-Chr19:5686831 7.86E-59 dispersed
Cmo13g00665 Cmo-Chr13:6979094 Cmo19g00476 Cmo-Chr19:5686831 1.66E-26 transposed
Cmo19g00476 Cmo-Chr19:5686831 Cmo02g01647 Cmo-Chr2:9492661 4.03E-88 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g645 . . . . . . Bma07g00956 . . . . . . . . . . . . . . . . . Cla10g00174 Cam10g0175 Cec10g0183 Cco10g0184 Clacu10g0179 Cmu10g1026 Cre10g0431 . . . . . . . . . . . . . . . . . . Cmo19g00476 . . . . . Cpe15g00357 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003240 1 4 1 2 2 2 1 2 2 1 2 2 1 2 2 2 2 2 1 1 1 1 1 1 1 1 1 4 1 1 48
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11619 PF06943 zf-LSD1 8.70E-11 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00476 Cmo_Chr19 FPKM 7.199324 6.549712 12.681227 11.377969 20.912632 17.377581 17.484583 21.039654 19.493242 20.085808